PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009791236.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | FAR1 | ||||||||
Protein Properties | Length: 781aa MW: 89745.4 Da PI: 7.6983 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 67.2 | 4.2e-21 | 57 | 132 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn YA+++GF++r+ + ++s+ +g++++r+fvCskeg++++ +rtgC a ++v+k ++gkw+++++++eHnHe+ XP_009791236.1 57 EFYNLYATKLGFRIRIGQLYRSRVDGSVISRRFVCSKEGFQTT--------------SRTGCPAFIRVQKADSGKWVLANVKKEHNHEFE 132 6***************************************976..............589***************************986 PP | |||||||
2 | FAR1 | 66.3 | 8.3e-21 | 217 | 291 | 1 | 89 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fYn+YA + GF+vr+ + +sk++g+it+r+fvCskeg++++ +r+gC ++++++++g+w v+++++eHnHel XP_009791236.1 217 EFYNAYAANSGFKVRIGQLFRSKNDGSITSRRFVCSKEGHQHP--------------SRVGCGTFMRIQRQDTGRWLVDRFQNEHNHEL 291 6**************************************9998..............4899***************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.9E-17 | 57 | 131 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF03101 | 3.2E-16 | 217 | 291 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 7.5E-26 | 389 | 482 | IPR018289 | MULE transposase domain |
Pfam | PF04434 | 5.4E-8 | 666 | 700 | IPR007527 | Zinc finger, SWIM-type |
PROSITE profile | PS50966 | 10.46 | 667 | 703 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 5.9E-8 | 678 | 705 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 781 aa Download sequence Send to blast |
MSREELDNPM TVRAKPASLA IVNNNNGYHR DNEEEEGESK LEPNVGLEFD SAEEAQEFYN 60 LYATKLGFRI RIGQLYRSRV DGSVISRRFV CSKEGFQTTS RTGCPAFIRV QKADSGKWVL 120 ANVKKEHNHE FETSGEICPS RIQRKNIPNP KSSVVVVSTR TGLRSIDEDG PGPSGIIDLK 180 RFKRERIDVE RIDVELQPRG SEPYKGLEFT SADEAYEFYN AYAANSGFKV RIGQLFRSKN 240 DGSITSRRFV CSKEGHQHPS RVGCGTFMRI QRQDTGRWLV DRFQNEHNHE LGMPADASGR 300 VKGFKEEASS VLENMELVEL NGGLSLVTRG RESRIGSDWY NELFEYFQAR QAGDMGFFYA 360 VEMHNGRALS VFWADARSRF SCTQFGDAVV FETTYRKEGS YSVPLASFIG INHHRQPVLL 420 GCALIAEESE ESFTWVFQAW LRAMSGRHPV SMVADQDRAI QHSIAQVFPG IHHRFSAWQI 480 KATEQENIGA LLSMNPEFKY EYETCIFQSQ TANEFEAAWN VLVNKYNLRK NTWLMEMYRM 540 RKSWVPLHIR GTFFAGIPMD GSLKSYFGTI LTSQTPLSEF LIRYEKALEQ RREEERKEDF 600 NSFNLQAVLH TKDPIEDQCR RFYTITMFQV FQKELLECYS FVGIKINVEG AISRYLVQKS 660 GSGDERNTVA FNASNLKVSC SCKMFEFEGV LCRHALKVFQ IMNIRELPSR YILHRWTKDA 720 KYGILRDVDS GGASQDHKAL MLWSLREEAK NYIEAGTASL ERYKLAFEIM QEGRRNLCWQ 780 N |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975449 | 0.0 | HG975449.1 Solanum pennellii chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009791235.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 7-like | ||||
Refseq | XP_009791236.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 7-like | ||||
Refseq | XP_009791237.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 7-like | ||||
Refseq | XP_016487162.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 7-like | ||||
Refseq | XP_016487163.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 7-like | ||||
Swissprot | Q9M8J3 | 0.0 | FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7 | ||||
TrEMBL | A0A1S4BE80 | 0.0 | A0A1S4BE80_TOBAC; protein FAR1-RELATED SEQUENCE 7-like | ||||
TrEMBL | A0A1U7XGN8 | 0.0 | A0A1U7XGN8_NICSY; protein FAR1-RELATED SEQUENCE 7-like | ||||
STRING | XP_009791235.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06250.1 | 0.0 | FAR1-related sequence 7 |
Publications ? help Back to Top | |||
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