PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009790461.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 545aa    MW: 60855.6 Da    PI: 8.398
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009790461.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.91e-33221278260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     +DgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers  d++++ei+Y+g+Hnh+k
  XP_009790461.1 221 EDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERSL-DGQITEIVYKGNHNHPK 278
                     7****************************************.***************85 PP
2WRKY106.61.3e-33387445159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vkg+++prsYY+Cts+gCpv+k+ver+++d + v++tYeg+Hnh+
  XP_009790461.1 387 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSPGCPVRKHVERASQDIRSVITTYEGKHNHD 445
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.6E-29208279IPR003657WRKY domain
PROSITE profilePS5081123.743215279IPR003657WRKY domain
SuperFamilySSF1182901.7E-25216279IPR003657WRKY domain
SMARTSM007741.1E-36220278IPR003657WRKY domain
PfamPF031061.8E-25221277IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.8E-37372447IPR003657WRKY domain
SuperFamilySSF1182904.58E-29379447IPR003657WRKY domain
PROSITE profilePS5081138.595382447IPR003657WRKY domain
SMARTSM007741.1E-38387446IPR003657WRKY domain
PfamPF031061.0E-25388445IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009753Biological Processresponse to jasmonic acid
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MAASSTIIDT SSMQNSSFSF PTSSSSFMTS SFTELLASDD YPTKSKGLGD RIAERTGSGV  60
PKFKSLPPPS LPLSPPPFSP SSYFAIPPGL SPTELLDSPV LLSASNILPS PTTGTFPAQA  120
FNWKSSRHQG VKQEDKNYSD FSFQPQFGQS FPSVSPSQTN LVPLKKQSWN YQESRNQNDQ  180
SSENANGRTE FNTMQSLKNN GQSNQYNNQS SQSIREQKRS EDGYNWRKYG QKQVKGSENP  240
RSYYKCTFPN CPTKKKVERS LDGQITEIVY KGNHNHPKPQ STRRSSSTAS SLTVQPYSTQ  300
TNEIPDHQSY GSNATPENSS ISFGDDDHDH EQSSQKSRSR GDDNEEEEPD SKRWKRESES  360
EGLSAPGSRT VREPRVVVQT TSDIDILDDG YRWRKYGQKV VKGNPNPRSY YKCTSPGCPV  420
RKHVERASQD IRSVITTYEG KHNHDVPAAR GSGINRPVAP NITYNNGANA MAIRPSVTSQ  480
IPLQSIRPQQ SPFTLEMLHK PSNYNGFSGY VNSEDSYENQ LQDNNVFSRA KDEPRDDMFM  540
ETLLC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-38212448878Probable WRKY transcription factor 4
2lex_A9e-38212448878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:26025535). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:19199048, PubMed:26025535). Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (PubMed:15618416, PubMed:19199048, PubMed:26025535). {ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048, ECO:0000269|PubMed:26025535}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:15618416, PubMed:19199048). Slightly down-regulated by gibberellic acid (GA) (PubMed:15618416). Accumulates in response to jasmonic acid (MeJA) (By similarity). {ECO:0000250|UniProtKB:Q6B6R4, ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4453920.0AB445392.1 Nicotiana benthamiana NbWRKY8 mRNA for double WRKY type transfactor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009790461.10.0PREDICTED: probable WRKY transcription factor 26
RefseqXP_016492389.10.0PREDICTED: probable WRKY transcription factor 33
SwissprotQ6IEQ71e-130WRK24_ORYSJ; WRKY transcription factor WRKY24
TrEMBLA0A1S4BU310.0A0A1S4BU31_TOBAC; probable WRKY transcription factor 33
TrEMBLA0A1U7XLH40.0A0A1U7XLH4_NICSY; probable WRKY transcription factor 26
STRINGXP_009790461.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22862460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-111WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang ZL, et al.
    A negative regulator encoded by a rice WRKY gene represses both abscisic acid and gibberellins signaling in aleurone cells.
    Plant Mol. Biol., 2009. 70(1-2): p. 139-51
    [PMID:19199048]
  3. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]
  4. Zhang L, et al.
    Three WRKY transcription factors additively repress abscisic acid and gibberellin signaling in aleurone cells.
    Plant Sci., 2015. 236: p. 214-22
    [PMID:26025535]