PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009789949.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 161aa MW: 17696.3 Da PI: 7.0699

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009789949.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	122	3.1e-38	5	105	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC+k+C++apyf eq +++fa+vhk+FGasn +kll ++p ++r +++ +l+yeA ar+rdPvyG+v++i++lqqq+ +l+ael XP_009789949.1 5 PCGACKYLRRKCVKGCIFAPYFDTEQgMSHFAAVHKVFGASNASKLLLSIPANKRLETVITLCYEALARVRDPVYGCVAHIFTLQQQVLTLQAEL 99 7********************99988*************************************************************** PP DUF260 95 allkee 100 a+++++ XP_009789949.1 100 AYVQAR 105 9976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.772	4	106	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.7E-37	5	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 161 aa Download sequence Send to blast
MSSGPCGACK YLRRKCVKGC IFAPYFDTEQ GMSHFAAVHK VFGASNASKL LLSIPANKRL 60 ETVITLCYEA LARVRDPVYG CVAHIFTLQQ QVLTLQAELA YVQARLSTLQ SASSEVAATY 120 SNISSVSMDP LFDTTGFHHV LDEELENCDI HSVAVDFVSR R

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-35	2	127	8	130	LOB family transfactor Ramosa2.1
5ly0_B	2e-35	2	127	8	130	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009789949.1	1e-117	PREDICTED: LOB domain-containing protein 19
Refseq	XP_016441663.1	1e-117	PREDICTED: LOB domain-containing protein 19-like
Swissprot	O22132	1e-58	LBD19_ARATH; LOB domain-containing protein 19
Swissprot	O81322	2e-58	LBD31_ARATH; LOB domain-containing protein 31
TrEMBL	A0A1S3XP11	1e-116	A0A1S3XP11_TOBAC; LOB domain-containing protein 19-like
TrEMBL	A0A1U7XST2	1e-116	A0A1U7XST2_NICSY; LOB domain-containing protein 19
STRING	XP_009789949.1	1e-117	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45410.1	6e-61	LOB domain-containing protein 19