PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009788297.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 335aa    MW: 35895.4 Da    PI: 6.2884
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009788297.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA48.61.1e-15247282134
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C++Cg ++  Tp++Rrgp g+++LCnaCGl+++ kg
  XP_009788297.1 247 CRHCGISSksTPMMRRGPAGPRSLCNACGLKWANKG 282
                     *****99999**********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009793.6E-12111146IPR010399Tify domain
PROSITE profilePS5132014.818111146IPR010399Tify domain
PfamPF062001.1E-12114145IPR010399Tify domain
PROSITE profilePS5101713.205178220IPR010402CCT domain
PfamPF062034.2E-16178220IPR010402CCT domain
SMARTSM004012.0E-11241295IPR000679Zinc finger, GATA-type
PROSITE profilePS501148.721241289IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.33E-11242292No hitNo description
Gene3DG3DSA:3.30.50.101.2E-14245288IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.00E-13246294No hitNo description
PROSITE patternPS003440247274IPR000679Zinc finger, GATA-type
PfamPF003201.2E-13247282IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MAESNRRANM YGRETINAAL HHQQTQIIDD DDDDDVAAGT ESGGGGADGG RESMDNNPNT  60
RYDHHHQSHS HSHALHNGGE AMEMNGVEGV SHNALYCPPN TEIVQAAVAA GSGASDQLTL  120
SFQGEVYVFD AVSPEKVQAV LLLLGGYEVP AGIPTVSVAA QSQRASADFP GRLNQPQRAA  180
SLNRFREKRK ERCFDKKIRY TVRKEVAMRM QRKKGQFTSS KSISDEAGSS SADWNEGSGQ  240
EEQETSCRHC GISSKSTPMM RRGPAGPRSL CNACGLKWAN KGILRDLSKV PTPGPQDQTA  300
KSGEQSNGEP NGSDAMATAA IITPDGDNTV VTAER
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00369DAPTransfer from AT3G21175Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009788297.10.0PREDICTED: GATA transcription factor 24-like
SwissprotQ8GXL77e-83GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A1U7X8550.0A0A1U7X855_NICSY; GATA transcription factor 24-like
STRINGXP_009788297.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26722348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.12e-81ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]