PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009787560.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 637aa    MW: 70437.7 Da    PI: 7.0708
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009787560.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix91.58.5e-2964147186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     rW++qe+laL+++r+em+  +r+++lk+plWeevs+k+++ g++rs k+Ckek+en+ k+++++k+g+ ++   + +t+++fdql 
  XP_009787560.1  64 RWPRQETLALLRIRSEMDVVFRDSSLKGPLWEEVSRKLADLGYHRSGKKCKEKFENVYKYHRRTKDGRASK--ADGKTYRFFDQLA 147
                     8********************************************************************96..66678******96 PP
2trihelix104.11e-32443528187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW+k+e+ aLi++r++++ +++++  k+plWee+s+ mr+ g++r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+qlea
  XP_009787560.1 443 RWPKEEIEALIRLRTSLDLKYQDNGPKGPLWEEISAGMRKLGYNRNAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLEA 528
                     8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.22457121IPR017877Myb-like domain
SMARTSM007170.003161123IPR001005SANT/Myb domain
CDDcd122031.55E-2463128No hitNo description
PfamPF138374.5E-1863148No hitNo description
SMARTSM007172.6E-5440502IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.0E-5442499IPR009057Homeodomain-like
PfamPF138371.2E-22442529No hitNo description
CDDcd122032.97E-29442507No hitNo description
PROSITE profilePS500907.689442500IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 637 aa     Download sequence    Send to blast
MLGGLMTTTS AGGGGAVSIS APPPPPPPQE APESGGSSEG GGGGDVAAAG GFSEEGERNS  60
GGNRWPRQET LALLRIRSEM DVVFRDSSLK GPLWEEVSRK LADLGYHRSG KKCKEKFENV  120
YKYHRRTKDG RASKADGKTY RFFDQLAAFE NTPSHTCLPP PPPPLAATPL TMAMPMPVRR  180
PNSSANPPIP MSQNTFTVSQ NNAAAPTVNH PLNASSLPPT QPIITTVNQI NRPQGNTSSL  240
LSNSTSSSST SSDEDIQKRH GKKRKWKDFF ERLTKDVIEK QEELQNNFLE TLEKRERERM  300
VREETWRVQE MTRMNREHDL LVQERSMAAA KDATIIAFLQ KITEQKNTPI PNITNASLAQ  360
IQFQLSEKSP SVPPHSQPQK QTQQPPAPPT TIPAPATTPA PATAVSLPMA IHAQVQTQAP  420
SLPFEAPKTD NGGENLSPAS SSRWPKEEIE ALIRLRTSLD LKYQDNGPKG PLWEEISAGM  480
RKLGYNRNAK RCKEKWENIN KYFKKVKESN KKRPEDSKTC PYFHQLEALY KEKAKNEVVP  540
NTGTGFGLKP ENNNPMVPIM AEPEQQWPFP SNQPQQQQQQ QQGIMSNIIQ DHDNESDSME  600
EDDYDDDEDE GNAYEIVTNK QPSSMAAATA TAATTAV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1256264QKRHGKKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00244DAPTransfer from AT1G76890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009787560.10.0PREDICTED: trihelix transcription factor GTL1-like
SwissprotQ391171e-137TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A1U7XM380.0A0A1U7XM38_NICSY; trihelix transcription factor GTL1-like
STRINGXP_009787560.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24022459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.24e-66Trihelix family protein