PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009787053.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

G2-like

Protein Properties

Length: 334aa MW: 36226.3 Da PI: 6.654

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009787053.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.9	5.5e-34	48	102	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl XP_009787053.1 48 KQRLRWTNELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 102 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.337	45	105	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.1E-32	47	103	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.12E-18	47	102	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.3E-26	48	103	IPR006447	Myb domain, plants
Pfam	PF00249	1.4E-9	50	101	IPR001005	SANT/Myb domain
Pfam	PF14379	3.0E-22	134	180	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MYQPKGVPGS SLAHNNAAVH SQSLDCDDGS MDPTSGGNNI NNPSLASKQR LRWTNELHER 60 FVDAVAQLGG PDRATPKGVL RVMGVQGLTI YHVKSHLQKY RLAKYLPDSS SDGKKPDKKE 120 SRDMLSSLDG SSGVEITTAL KLQMEVQKRL HEQLEVQKQL QLRIEAQGKY LKKIIEEQQR 180 LSGVLSEVPG SGVAAPPTGD NGPESDNRSD PGTPAPTSES PNVEKHVKAH APTKSLSVDE 240 SFSLQHEPLT PDSDCPESSP LESPNGERSS KKHRVGTNAA FAKDDVALTH QILESSLSPR 300 YQQPPSVFMT GDQFNRTSGL SLGIEDHQVS GNNM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	6e-24	48	105	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	6e-24	48	105	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	6e-24	48	105	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	6e-24	48	105	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00252	DAP	Transfer from AT2G01060	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009787053.1	0.0	PREDICTED: myb family transcription factor APL-like
Swissprot	Q9SJW0	1e-122	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	A0A1U7X874	0.0	A0A1U7X874_NICSY; myb family transcription factor APL-like
STRING	XP_009787053.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2796	24	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	1e-115	G2-like family protein