PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009787002.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 481aa    MW: 54594.1 Da    PI: 7.16
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009787002.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.61.9e-10431479247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      +rW+t E+e l  +v+++G g+W++I  t     + Rt+ ++k++w+++
   XP_009787002.1 431 KRWSTIEEETLRSGVQKYGVGNWRLIFDTYHeifEDRTPGDLKDKWRNL 479
                      69*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.915425481IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.4E-11425479IPR009057Homeodomain-like
SuperFamilySSF466894.52E-14427480IPR009057Homeodomain-like
SMARTSM007170.001429481IPR001005SANT/Myb domain
CDDcd116603.16E-16431480No hitNo description
PfamPF002492.4E-7431479IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MDMDISRWIL EFILWQPLED TIFNALIGVL PLPNEDSRLK KALILRKIQS EISNGSVSEK  60
ILEFFEVMEE LYTQEGIESS EAMKAAYCAV AVDCTVRFLN NKSEKVNYFE AVKRIWKQRI  120
NKLEKVENVG VVSEELWKWR DEIEAALWED RRCQNVIMRS KSISAVVAVK VFVKEAKERI  180
GPPFLEVVAE TLRRDDAVKA YLGLENKEEH GERIESLSIA GQDLTCCNHD KEANKRNALR  240
KRKHVAFKRT RGTTPAGVCK GVKIADSAEP GVEASRVEED LLHTPKIDNA QEALKLSSLE  300
LRAGVKDPLP EALELAETLM SLGRDSSAQQ PAENENGRAP HLVVDSNGVV QANGGNEDDQ  360
LIGLQNAAPK PSIMARNSTA HTFEWNDSID NLSEGSPSSG RRFMLPTPRR TKVFPLKKYE  420
FKKVTKRRKS KRWSTIEEET LRSGVQKYGV GNWRLIFDTY HEIFEDRTPG DLKDKWRNLT  480
S
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009787002.10.0PREDICTED: uncharacterized protein LOC104235031 isoform X1
RefseqXP_016478557.10.0PREDICTED: uncharacterized protein LOC107799932 isoform X1
TrEMBLA0A1S4AP900.0A0A1S4AP90_TOBAC; uncharacterized protein LOC107799932 isoform X1
TrEMBLA0A1U7X4H80.0A0A1U7X4H8_NICSY; uncharacterized protein LOC104235031 isoform X1
STRINGXP_009787002.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37742439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06910.12e-15TRF-like 7