PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009786679.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 254aa    MW: 28933.6 Da    PI: 10.0913
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009786679.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix46.97.3e-1519102186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergf..erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W++  + +Liea  ++  rl+rg+l++++W+ev++ +  r+ g+  +r+ +qCk++++ l+k+yk +k+ ++       s++p+++ l+
  XP_009786679.1  19 CWSEGATETLIEAWGDRYIRLNRGNLRQKDWKEVADTVnsRQNGVkpQRTDVQCKNRIDTLKKKYKLEKTKSSP------SKWPFYNCLD 102
                     7*************************************88777776689*****************99998885......58***99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.6E-2617102No hitNo description
Gene3DG3DSA:1.10.10.600.0014585IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MESQTAVPTR PHAGGREDCW SEGATETLIE AWGDRYIRLN RGNLRQKDWK EVADTVNSRQ  60
NGVKPQRTDV QCKNRIDTLK KKYKLEKTKS SPSKWPFYNC LDYLIGTNNV STSPCNRKLT  120
AAITLTVKSS SNPNPNFGAV NYSGSSSRMN SSGSNYSSHD DLPFGSGGRK NKMEYVGLAE  180
ETTAYKELAR AILRFGEIYE RIESTKQQQM VELEKQRMKF TKDLEVQRMN MFMETQLQIE  240
RAKRPARHPT STGK
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00488DAPTransfer from AT5G05550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009786679.10.0PREDICTED: uncharacterized protein LOC104234753
SwissprotQ9LJG81e-33ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A1U7XIA30.0A0A1U7XIA3_NICSY; uncharacterized protein LOC104234753
STRINGXP_009786679.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA137071215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05550.19e-63sequence-specific DNA binding transcription factors