PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009786294.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 611aa    MW: 68633.2 Da    PI: 4.5673
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009786294.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.15.9e-52291552128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                     ppGfrFhPtdeelvv+yLk+k+ ++++ l ++i+e+d+yk++P+dLp  +k+k+++++w+fFs+r++ky++g r+nratk+gyWkatgkd+ +++
  XP_009786294.1  29 PPGFRFHPTDEELVVYYLKRKICRRRILL-DAIAETDVYKWDPEDLPdlSKLKTGDRQWFFFSPRERKYPNGARSNRATKHGYWKATGKDRIITC 122
                     9*************************999.99**************96559999***************************************** PP

             NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++++vg+kktLvfykgrap ge+tdWvmhey++
  XP_009786294.1 123 -NSRAVGVKKTLVFYKGRAPVGERTDWVMHEYTM 155
                     .999****************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.06E-6022178IPR003441NAC domain
PROSITE profilePS5100555.94828178IPR003441NAC domain
PfamPF023651.2E-2729154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070301Biological Processcellular response to hydrogen peroxide
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 611 aa     Download sequence    Send to blast
MKLLVDSSTP SSSSACKEIK VFGESNIFPP GFRFHPTDEE LVVYYLKRKI CRRRILLDAI  60
AETDVYKWDP EDLPDLSKLK TGDRQWFFFS PRERKYPNGA RSNRATKHGY WKATGKDRII  120
TCNSRAVGVK KTLVFYKGRA PVGERTDWVM HEYTMDEEEL KRCKNAQDYY ALYKVFKKSG  180
PGPKNGEQYG AYFREEDWVD DECPVAEVSV QQENSTKHVN EVPAAADDAL EELLKRIADD  240
EHVLLEPFFV DNDYALDQLV QEEDTESTLL DQSMEVNLYN HCAVVGPSCQ QYNANTSFDL  300
TQSGTSQLQL HEAAEVSSAP VNPEKVLPAV EEDFLEDFLE MDDLLGPEPS VQNFDDSALS  360
IQNFDNQTPN GQIFDKPAGN LGTVQFDDFD GLGEFDLYHD AHLLLDNEGT TVGQNAELYM  420
NNFVNGIAYP DSTTYMSTFQ NGMMNNRQMH LNHENQINHQ LWRHDESFNV FNPIEGDQSV  480
VHQATSGVVY DNNTNHPVGA NQNPIAKKND GAQSWISSNL WAFVDSIPTT PASAAESALV  540
NRAFERMSSF SRMKLNARNM NVAAGNTSAA SSSSGKSKNG FFCFSLLGVL CAILWVLIGI  600
SDKILGRYIS S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-482815515140Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00179DAPTransfer from AT1G34190Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4375250.0KF437525.1 Nicotiana benthamiana putative membrane bound NAC transcription factor 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009786294.10.0PREDICTED: uncharacterized protein LOC104234432
TrEMBLA0A1U7XH700.0A0A1U7XH70_NICSY; uncharacterized protein LOC104234432
STRINGXP_009786294.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32122451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34190.15e-92NAC domain containing protein 17