PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009786110.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 276aa    MW: 31511.2 Da    PI: 8.6778
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009786110.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.000145274123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C+ C + F++   L  H+++H
  XP_009786110.1 52 YTCSFCRREFRSAQALGGHMNVH 74
                    9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.05E-64979No hitNo description
SMARTSM003550.00615274IPR015880Zinc finger, C2H2-like
PfamPF139121.8E-55275IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.2195279IPR007087Zinc finger, C2H2
PROSITE patternPS0002805474IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MEQARYWMSA KRKHDMTLSN NPSSYGDSWE EQAFAEDAAG ALGGCIWPPR SYTCSFCRRE  60
FRSAQALGGH MNVHRRDRAR MKQSPPSNIP SGDHQHQVFI PPHHNNSHVQ YPSHQICTFM  120
YHPNSDSDHG VLRSPYSDPL PIRVSSQKTL ATHSSFSSIV QEQSKNKLSS PPSWSNLVAD  180
KNSCLSNVKN HEEKKLKSID FKKVERNLEV IDSNSRAKQD HVAITNCKRR RVDEENNTPF  240
ANLFPKTSSM ERCRPQSEAL ERIPSAIEEL DLELRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-134774229superman protein
2l1o_A2e-134774229Transcriptional regulator SUPERMAN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1227231KRRRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754481e-119HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009786110.10.0PREDICTED: zinc finger protein 1
RefseqXP_016497281.10.0PREDICTED: zinc finger protein 1-like
TrEMBLA0A1S4C8480.0A0A1S4C848_TOBAC; zinc finger protein 1-like
TrEMBLA0A1U7XI080.0A0A1U7XI08_NICSY; zinc finger protein 1
STRINGXP_009786110.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA90452026
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.19e-28zinc-finger protein 10