PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009785793.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 684aa    MW: 76024.6 Da    PI: 8.3974
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009785793.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.52.7e-07575624147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av+qlG+g+W+ +  +      +Rt  ++k++w ++
   XP_009785793.1 575 RRPFSVAEVEALVEAVEQLGTGRWRDVKMRAFdnaDHRTYVDLKDKWKTL 624
                      6789999*******************97666689*9***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542366.9E-6377460IPR029071Ubiquitin-related domain
PROSITE profilePS500538.873381451IPR000626Ubiquitin domain
PROSITE profilePS5129416.721570629IPR017930Myb domain
SMARTSM007179.1E-8574627IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-10575625IPR009057Homeodomain-like
SuperFamilySSF466898.97E-16576657IPR009057Homeodomain-like
CDDcd116604.19E-17576626No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 684 aa     Download sequence    Send to blast
MVSKKRLNCG FSGYQIPVIP KAPRSARKRR PCNKLDDDQI CAFELLAAVA GKLLLESESS  60
ASSNAGAPAG KYEQVEDDKA VRSECLDQGS CIESAYIPEA AEQEQTFKNG LSKPFAENKS  120
FLEHTSTIIG SYSLLKDWSD VKLESCKEVS ADAQLQTKVE GGSPDLADPF DIRIVEGTRK  180
QLDDDSKQTE LTVVNSCSIK APIEKNVNNS VLVNSDSSVQ LPLYRDPVPC ASFVKSRNNV  240
KLGIRDDDEN YFGCYRHSTK IRTFRPTSRI TYRRIRKMLT SRHWKVAPKL KDCERSYSND  300
GVKSFYCNRK SKRGNERCRF EIPSKRRKLY DHGFAVAYDQ EASSKSISNS HEKGIKGDTA  360
IPPKGAGASA SVRNHQKDPN VKFSINSFKV PELYIEVPEM ETIGSLKRTV MEAVTAILGS  420
GLRVGVVLQG KKVRDDNRTL QQAGISPNDN LDTLGFTLEP SFSKVPLSLS PNDDTLASAS  480
YITDQELSRH PSSPIFELGP PNALSDPPEA KLDKHDESNH ELEMSPTTPI DQSADEAFPD  540
FKALAIVPPV NTEALAVVPV NHKNRRSELS QRRTRRPFSV AEVEALVEAV EQLGTGRWRD  600
VKMRAFDNAD HRTYVDLKDK WKTLVHTASI APQQRRGEPV PQELLDRVLA AHSYWSQHQA  660
KQHAKQHAEP LKIVDAQAQN GVAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A3e-675596801118Telomere binding protein TBP1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009785793.10.0PREDICTED: telomere repeat-binding protein 3-like isoform X2
TrEMBLA0A1U7X4K30.0A0A1U7X4K3_NICSY; telomere repeat-binding protein 3-like isoform X2
STRINGXP_009785792.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.12e-92TRF-like 2