PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009785792.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 695aa    MW: 77292 Da    PI: 8.352
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009785792.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.52.7e-07586635147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av+qlG+g+W+ +  +      +Rt  ++k++w ++
   XP_009785792.1 586 RRPFSVAEVEALVEAVEQLGTGRWRDVKMRAFdnaDHRTYVDLKDKWKTL 635
                      6789999*******************97666689*9***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542366.9E-6388471IPR029071Ubiquitin-related domain
PROSITE profilePS500538.873392462IPR000626Ubiquitin domain
PROSITE profilePS5129416.721581640IPR017930Myb domain
SMARTSM007179.1E-8585638IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.4E-10586636IPR009057Homeodomain-like
SuperFamilySSF466898.97E-16587668IPR009057Homeodomain-like
CDDcd116604.53E-17587637No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 695 aa     Download sequence    Send to blast
MVSKKRLNCG FSGYQIPVIP KAPRSARKRR PCNKLDDDQI CAFELLAAVA GKLLLESESS  60
ASSNAGAPAG KYELANCRDS IKHEQVEDDK AVRSECLDQG SCIESAYIPE AAEQEQTFKN  120
GLSKPFAENK SFLEHTSTII GSYSLLKDWS DVKLESCKEV SADAQLQTKV EGGSPDLADP  180
FDIRIVEGTR KQLDDDSKQT ELTVVNSCSI KAPIEKNVNN SVLVNSDSSV QLPLYRDPVP  240
CASFVKSRNN VKLGIRDDDE NYFGCYRHST KIRTFRPTSR ITYRRIRKML TSRHWKVAPK  300
LKDCERSYSN DGVKSFYCNR KSKRGNERCR FEIPSKRRKL YDHGFAVAYD QEASSKSISN  360
SHEKGIKGDT AIPPKGAGAS ASVRNHQKDP NVKFSINSFK VPELYIEVPE METIGSLKRT  420
VMEAVTAILG SGLRVGVVLQ GKKVRDDNRT LQQAGISPND NLDTLGFTLE PSFSKVPLSL  480
SPNDDTLASA SYITDQELSR HPSSPIFELG PPNALSDPPE AKLDKHDESN HELEMSPTTP  540
IDQSADEAFP DFKALAIVPP VNTEALAVVP VNHKNRRSEL SQRRTRRPFS VAEVEALVEA  600
VEQLGTGRWR DVKMRAFDNA DHRTYVDLKD KWKTLVHTAS IAPQQRRGEP VPQELLDRVL  660
AAHSYWSQHQ AKQHAKQHAE PLKIVDAQAQ NGVAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A4e-675706911118Telomere binding protein TBP1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009785792.10.0PREDICTED: telomere repeat-binding protein 3-like isoform X1
TrEMBLA0A1U7X0V70.0A0A1U7X0V7_NICSY; telomere repeat-binding protein 3-like isoform X1
STRINGXP_009785792.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20931729
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.12e-92TRF-like 2