PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009785671.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 277aa MW: 31183.4 Da PI: 8.0986 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 86.7 | 1.3e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n + rqvtfskRr g++KKA ELSvLCda+va+iifs tgkl+ey+s XP_009785671.1 9 KKIDNITARQVTFSKRRRGLFKKAAELSVLCDADVALIIFSATGKLFEYAS 59 68***********************************************86 PP | |||||||
2 | K-box | 41.2 | 6.9e-15 | 104 | 171 | 32 | 99 |
K-box 32 qreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 re+R+++Ge+Le Lsl+ Lqq+e++Le++l+++ + K ++ +i +lq+k l eenk+L++k++ XP_009785671.1 104 NRELRQMKGEELEGLSLEKLQQIEKRLETGLTRVLEIKGTKIMGEITKLQRKGAVLMEENKQLKQKMA 171 4899*************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 6.8E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 29.744 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.62E-30 | 3 | 72 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-26 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.0E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.92E-32 | 12 | 70 | No hit | No description |
PRINTS | PR00404 | 1.9E-26 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-26 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 12.571 | 86 | 176 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 9.9E-14 | 95 | 170 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 277 aa Download sequence Send to blast |
MAREKIKIKK IDNITARQVT FSKRRRGLFK KAAELSVLCD ADVALIIFSA TGKLFEYASS 60 SMEDILGKYK LHLTSLEKDD QPSLDLQLEN SLNTNLIKEL ADKNRELRQM KGEELEGLSL 120 EKLQQIEKRL ETGLTRVLEI KGTKIMGEIT KLQRKGAVLM EENKQLKQKM AMMNEGELPL 180 LTDLDCMVME EGQSSDQSIT TNVSTSGPPP EDDCSNAFLK LGTSRRNKFC YGAIAKVLFI 240 PCLPGIVQFI KLLQQCNALR IFGINDWAIQ TLPLLLD |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 3e-20 | 1 | 69 | 1 | 69 | MEF2C |
5f28_B | 3e-20 | 1 | 69 | 1 | 69 | MEF2C |
5f28_C | 3e-20 | 1 | 69 | 1 | 69 | MEF2C |
5f28_D | 3e-20 | 1 | 69 | 1 | 69 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription repressor that inhibit floral transition in the autonomous flowering pathway, independent of photoperiod and temperature. Acts in a dosage-dependent manner. Together with AGL24 and AP1, controls the identity of the floral meristem and regulates expression of class B, C and E genes. Promotes EFM expression to suppress flowering (PubMed:25132385). {ECO:0000269|PubMed:16679456, ECO:0000269|PubMed:18694458, ECO:0000269|PubMed:19656343, ECO:0000269|PubMed:25132385}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Repressed by the floral homeotic genes AP1 and SEP3 in emerging floral meristems. Up-regulated by HUA2. {ECO:0000269|PubMed:15659097, ECO:0000269|PubMed:17428825, ECO:0000269|PubMed:18694458}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HQ687368 | 0.0 | HQ687368.1 Lycium chinense MPF2-like transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009785671.1 | 0.0 | PREDICTED: MADS-box protein AGL24-like isoform X1 | ||||
Swissprot | Q9FVC1 | 2e-81 | SVP_ARATH; MADS-box protein SVP | ||||
TrEMBL | A0A1U7X7L6 | 0.0 | A0A1U7X7L6_NICSY; MADS-box protein AGL24-like isoform X1 | ||||
STRING | XP_009785671.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA938 | 23 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G22540.1 | 5e-75 | MIKC_MADS family protein |