PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009785427.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HSF
Protein Properties Length: 405aa    MW: 46190.5 Da    PI: 4.8409
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009785427.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.19.1e-36141052102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     F+ k+ye+++d++++ ++sws++++sf+v+++ +fa+++Lp+yFkh+nf+SF+RQLn+YgF+kv+ e+         weF+++ F kg+ +ll++
  XP_009785427.1  14 FIAKTYEMVDDPSTDPIVSWSSTNKSFIVWNPPDFARELLPRYFKHNNFSSFIRQLNTYGFRKVDPEQ---------WEFANEDFIKGEPHLLRN 99 
                     9***************************************************************9998.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i+r+k 
  XP_009785427.1 100 IHRRKP 105
                     ***985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467854.9E-369103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.2E-6310103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.2E-3811103IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004478.8E-3214103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.6E-201437IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.6E-205264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.6E-206577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MDEAPCSANA LPPFIAKTYE MVDDPSTDPI VSWSSTNKSF IVWNPPDFAR ELLPRYFKHN  60
NFSSFIRQLN TYGFRKVDPE QWEFANEDFI KGEPHLLRNI HRRKPVHSHS VQNLHSVSSA  120
LTESERQGYK EDIEKLKHEN ESLHLELQGH KQDYQGLEMQ MLVFTERVQL VKHRQKNMLS  180
TLARTINKPG LALSLIPQLE MNERKRRLPG NSFLYNETGL EDNQASSSQE STRENMDPTS  240
DLTLNKELLD QLDSSLTFWE NILHDVDRNW MRRSSSVDLD ASISCADSPA ISYSQLNVDI  300
GSKICGIDMN SEPKGIAVPE VALQEDQVVV IGTATNRPTG VNDVFWEQFL TENPGSTESD  360
VKPEQEDIDS QSESKTVEQG KSWWKMKSVN SLTEQLGHLT PAERT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-231110326129Heat shock factor protein 1
5d5v_B1e-231110326129Heat shock factor protein 1
5d5v_D1e-231110326129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1202207ERKRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009785427.10.0PREDICTED: heat stress transcription factor A-4a-like
TrEMBLA0A1U7WZU80.0A0A1U7WZU8_NICSY; heat stress transcription factor A-4a-like
STRINGXP_009785427.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34482344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-112heat shock transcription factor A4A