PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009784767.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 313aa MW: 35598.3 Da PI: 9.328 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 39.6 | 1.2e-12 | 147 | 191 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+ E++l++ + +++G+g+Wk+I+r+ +t+ q+ s+ qky XP_009784767.1 147 PWTEGEHQLFLMGLNRFGKGDWKSISRYYVVSKTPTQVASHAQKY 191 7*****************************99************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 7.103 | 31 | 87 | IPR017884 | SANT domain |
SMART | SM00717 | 1.4 | 32 | 85 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.76E-7 | 34 | 87 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.494 | 139 | 196 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.98E-15 | 141 | 195 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.7E-8 | 144 | 194 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 2.7E-16 | 145 | 194 | IPR006447 | Myb domain, plants |
CDD | cd00167 | 3.98E-8 | 147 | 192 | No hit | No description |
Pfam | PF00249 | 2.9E-10 | 147 | 191 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.5E-8 | 147 | 191 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MEWPEFLERS NSQESTFGLF SATPQNNEVV ARADQWTPEE KQVFENALSV FNNPISPSFF 60 DYVASKLPHK PLEEIKKYYL ALFKDVEMEN PEPKNKAPAI DGYALEHDQQ NNYQAPQEDD 120 HSDMEAAQNG TPPPVENNRP RRRRGIPWTE GEHQLFLMGL NRFGKGDWKS ISRYYVVSKT 180 PTQVASHAQK YFGRRNSATP PERRRPSIND IQTVTLNPRA TTVTAQINNG RLAYNNNQGA 240 SLPMHYPYNF GGAMSGHKSH GNFGNFIHRG EASGSNSFTM HQNNNNNNLH RPVSPRPFLS 300 MYLSSATRSN NRV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009784767.1 | 0.0 | PREDICTED: transcription factor DIVARICATA-like | ||||
TrEMBL | A0A1U7WXW8 | 0.0 | A0A1U7WXW8_NICSY; transcription factor DIVARICATA-like | ||||
STRING | XP_009784767.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5234 | 20 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49010.1 | 6e-32 | MYB family protein |