PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009784719.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 125aa MW: 14300.5 Da PI: 7.2102

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009784719.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	110.3	1.4e-34	12	111	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaC +lr++C ++C lapyfp++++++f+nv +lFG+sn++++l+++++e++ ++++sl+ eA++r ++PvyG++++ +k++ +e++++el+ XP_009784719.1 12 KCAACTHLRKRCDANCQLAPYFPSNRTEDFQNVYQLFGVSNIINMLNSVDDEQKGKMAESLILEAKIRKENPVYGCLAIERKMKLAIEEAEKELE 106 5********************************************************************************************** PP DUF260 96 llkee 100 ++++ XP_009784719.1 107 IVHKQ 111 99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.678	11	112	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.5E-33	12	109	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 125 aa Download sequence Send to blast
MENANPLIST EKCAACTHLR KRCDANCQLA PYFPSNRTED FQNVYQLFGV SNIINMLNSV 60 DDEQKGKMAE SLILEAKIRK ENPVYGCLAI ERKMKLAIEE AEKELEIVHK QNAFCKEMAK 120 SQMQK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-22	13	111	12	110	LOB family transfactor Ramosa2.1
5ly0_B	4e-22	13	111	12	110	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009784719.1	2e-88	PREDICTED: LOB domain-containing protein 27-like
Refseq	XP_016442590.1	2e-88	PREDICTED: LOB domain-containing protein 27-like
TrEMBL	A0A1S3XRT8	4e-87	A0A1S3XRT8_TOBAC; LOB domain-containing protein 27-like
TrEMBL	A0A1U7XCP9	4e-87	A0A1U7XCP9_NICSY; LOB domain-containing protein 27-like
STRING	XP_009784719.1	7e-88	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2866	17	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	3e-24	LOB domain-containing protein 27