PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009784230.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | Nin-like | ||||||||
Protein Properties | Length: 150aa MW: 17881.7 Da PI: 10.353 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 85.2 | 6e-27 | 39 | 88 | 3 | 52 |
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++++l+++++yF+ pi++AAkeL v+lTvLK++CR+++I+RWPhRkiksl XP_009784230.1 39 DTLELDEIQRYFHVPINKAAKELRVGLTVLKKRCRELNIMRWPHRKIKSL 88 7899********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.666 | 22 | 110 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 3.3E-24 | 40 | 88 | IPR003035 | RWP-RK domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 150 aa Download sequence Send to blast |
MQDKNYYDYT VGEIEFSSGT NNKELIRKRN NNGRHKKSDT LELDEIQRYF HVPINKAAKE 60 LRVGLTVLKK RCRELNIMRW PHRKIKSLQT LIDSVKEMGL TSEVEMLEEH QRMLEKVPEM 120 ELTERTKKLR QTCFKANYKK RRAGMAAFSF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 9e-54 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009784230.1 | 1e-109 | PREDICTED: protein RKD4 | ||||
Swissprot | Q9LVU8 | 1e-40 | RKD4_ARATH; Protein RKD4 | ||||
TrEMBL | A0A1U7XCP7 | 1e-107 | A0A1U7XCP7_NICSY; protein RKD4 | ||||
STRING | XP_009784230.1 | 1e-108 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12143 | 19 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53040.1 | 5e-43 | RWP-RK domain-containing protein |
Publications ? help Back to Top | |||
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