PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009784214.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ARR-B | ||||||||
Protein Properties | Length: 564aa MW: 62712.4 Da PI: 6.7674 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 86.3 | 3.1e-27 | 319 | 373 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k +++W+peLH++Fv+aveqL G+++A+P++ilelmkv+g+t+++v+SHLQkYR++ XP_009784214.1 319 KMKVDWSPELHKKFVQAVEQL-GIDQAIPSRILELMKVEGITRHNVASHLQKYRMH 373 5689*****************.********************************96 PP | |||||||
2 | Response_reg | 31.8 | 7.4e-12 | 21 | 127 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 vl+ d++ + ++ +r+ lek +y +v ++ + eal + +k +++ ++ + ++dG+ l+ +++++ +lp i+ + + +++ +++ +G XP_009784214.1 21 VLLLDEDCNSASEMRSRLEKLDY-IVYSFCNENEALSAISNKSedFHVAIVEVTAGNSDGV--LQFLESAK-DLPTIMTSNIHSLSTMMKCIALG 111 7899999999*************.***************666556***************5..66676666.9*******9999*********** PP ESEEEESS--HHHHHH CS Response_reg 94 akdflsKpfdpeelvk 109 a +fl Kp + ++l + XP_009784214.1 112 AVEFLQKPLSDDKLKN 127 ************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.2300 | 7.3E-17 | 17 | 157 | No hit | No description |
SuperFamily | SSF52172 | 4.7E-16 | 17 | 138 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 0.0026 | 19 | 129 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 21.029 | 20 | 133 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 1.4E-8 | 21 | 127 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 7.70E-10 | 22 | 132 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-26 | 316 | 376 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.363 | 316 | 375 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.69E-18 | 317 | 375 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.0E-24 | 319 | 373 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.4E-7 | 322 | 371 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 564 aa Download sequence Send to blast |
MICTEDDQLL GWKDFPKGLK VLLLDEDCNS ASEMRSRLEK LDYIVYSFCN ENEALSAISN 60 KSEDFHVAIV EVTAGNSDGV LQFLESAKDL PTIMTSNIHS LSTMMKCIAL GAVEFLQKPL 120 SDDKLKNIWQ HVVRKQAFNA GEKDVPESLK PVKESLVSVP QLQPVKSAAG DKSSNETEPF 180 TTVPGNNNEH SSGCDKYPAP STPQLKHGVR SVDDGDCQEH TIFSTEQDSG EHDGDAKSVE 240 TTFNNTVAES TVQTSPREQQ GQTIVKEENG SSPHQKMEAD IATSSPSNNC PDNRTSHSAE 300 PSKASAPHSS SGTKTNKKKM KVDWSPELHK KFVQAVEQLG IDQAIPSRIL ELMKVEGITR 360 HNVASHLQKY RMHRRQILPK EVERRWPHPQ PRDSVQRGCY PHHTPIMTFP PYHCNHVPAA 420 GQLYPAWVPP ASYPNGLQVW GSPYYPAWQP ADSWHWNPHP GLHADTWGSP VMPPSLGSYP 480 PYPQNGGVYR PNGMQNRYSM LEKSFDLHPA EEVIDKVVKE AITKPWLPLP LGLKRPSTES 540 VLRELSRQGI STVPPQINGS RGRS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 5e-16 | 324 | 373 | 6 | 55 | Transcription factor LUX |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009784214.1 | 0.0 | PREDICTED: two-component response regulator-like APRR2 isoform X1 | ||||
Refseq | XP_009784215.1 | 0.0 | PREDICTED: two-component response regulator-like APRR2 isoform X1 | ||||
Refseq | XP_009784216.1 | 0.0 | PREDICTED: two-component response regulator-like APRR2 isoform X1 | ||||
Refseq | XP_009784217.1 | 0.0 | PREDICTED: two-component response regulator-like APRR2 isoform X1 | ||||
Refseq | XP_009784219.1 | 0.0 | PREDICTED: two-component response regulator-like APRR2 isoform X1 | ||||
Swissprot | Q6LA43 | 1e-129 | APRR2_ARATH; Two-component response regulator-like APRR2 | ||||
TrEMBL | A0A1U7X3F4 | 0.0 | A0A1U7X3F4_NICSY; two-component response regulator-like APRR2 isoform X1 | ||||
STRING | XP_009784214.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5673 | 15 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18020.6 | 1e-131 | ARR-B family protein |
Publications ? help Back to Top | |||
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