PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009784128.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | SRS | ||||||||
Protein Properties | Length: 204aa MW: 23424.5 Da PI: 8.7985 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 184.2 | 5.2e-57 | 12 | 149 | 4 | 154 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalsstklssaesk 97 +++CqdCGnqakkdC + RCRtCCksrgf+C+thvkstW+p+++rr r++ l++ ++++++++ +a++kr re+ ++ XP_009784128.1 12 SNSRCQDCGNQAKKDCPYLRCRTCCKSRGFQCQTHVKSTWIPVSRRRPRHHLLHTIQQQQQQQKqLQANPKRYREN--------------DNNLA 92 6789*********************************************999998866655443233444444433..............22223 PP DUF702 98 keletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 + ++lP+e+s +avfrcvrvssvd+ +++aYqt+v+i+GhvfkGiLydqG+e+ XP_009784128.1 93 AGGKEEDLPTELSLPAVFRCVRVSSVDNVVDQYAYQTSVKIAGHVFKGILYDQGPET 149 3345678************************************************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 5.0E-61 | 14 | 148 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 6.4E-27 | 16 | 57 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 7.4E-25 | 100 | 147 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 204 aa Download sequence Send to blast |
MMMMMREDGI SSNSRCQDCG NQAKKDCPYL RCRTCCKSRG FQCQTHVKST WIPVSRRRPR 60 HHLLHTIQQQ QQQQKQLQAN PKRYRENDNN LAAGGKEEDL PTELSLPAVF RCVRVSSVDN 120 VVDQYAYQTS VKIAGHVFKG ILYDQGPETE THYTNMARES SSNGFQQEQL TTNLTQPLPS 180 YPSPFNNFMP GINIFCQIPK NHLL |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009784128.1 | 1e-154 | PREDICTED: protein SHI RELATED SEQUENCE 5-like isoform X3 | ||||
Refseq | XP_016459689.1 | 1e-154 | PREDICTED: protein SHI RELATED SEQUENCE 5-like | ||||
Swissprot | Q9LQZ5 | 1e-52 | SRS5_ARATH; Protein SHI RELATED SEQUENCE 5 | ||||
TrEMBL | A0A1S3Z5R2 | 1e-153 | A0A1S3Z5R2_TOBAC; protein SHI RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A1U7WZW2 | 1e-153 | A0A1U7WZW2_NICSY; protein SHI RELATED SEQUENCE 5-like isoform X3 | ||||
STRING | XP_009784124.1 | 1e-141 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G75520.1 | 5e-52 | SHI-related sequence 5 |
Publications ? help Back to Top | |||
---|---|---|---|
|