PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009783344.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HB-other
Protein Properties Length: 499aa    MW: 56150.4 Da    PI: 8.5664
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009783344.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.72e-182777757
                    --HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
        Homeobox  7 ftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                     t+ q+e Le+++++++yp+++++ eLA++lgLte+qV+ WF+ rR k+k+
  XP_009783344.1 27 KTRAQIEGLEKFYKEHKYPTESMKSELAQSLGLTEKQVSGWFCHRRLKDKR 77
                    6899*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.2E-20977IPR009057Homeodomain-like
SuperFamilySSF466891.03E-161177IPR009057Homeodomain-like
PROSITE profilePS5007116.6171878IPR001356Homeobox domain
SMARTSM003898.7E-192082IPR001356Homeobox domain
CDDcd000867.03E-162277No hitNo description
PfamPF000465.7E-162677IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MEDPVVMHSE DDKGHTEKNK TRIKVIKTRA QIEGLEKFYK EHKYPTESMK SELAQSLGLT  60
EKQVSGWFCH RRLKDKRLLS RETYANGRQD RSSGVIQDRG SGFRQDSCGS TKQGDDKNFD  120
HREVESRRLT APEVSAAGVT YEVGTQYRAK SNLMEDTPSG SSSSLRDACF SRNVESFDMA  180
TSRYLSSDVP TDLKSVKPRT GPSGYLKVKG QVENAAITAV KRQLGSLYRQ DGPPLGVEFD  240
PLPPGAFESS VQNLVDEPEY AGEPVPALTP DFSKVYKQSN SCIGHGSISK TNSHVPNLEG  300
ASFKKSLKSA HPEYYFNEKP GQNSSIHDGD CYYLGRDSSI DMHKGSGREV AVDGRCNYKY  360
MAKHDGAEIR TNTSSSSGFR SPRTGKVNGE QVKPRFTSCN ETNLKIMEEE DLERKPSNFV  420
LKGSKHRYCP ERVLSSKVEK DYIHVDRPPV DENYNLDRVK IPWENEMRAA KRARDEDPNH  480
QEYPRNASGT QCHPRQIIR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754510.0HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009783344.10.0PREDICTED: uncharacterized protein LOC104231943 isoform X2
RefseqXP_016443574.10.0PREDICTED: homeobox-DDT domain protein RLT1-like isoform X1
RefseqXP_016443575.10.0PREDICTED: homeobox-DDT domain protein RLT1-like isoform X1
RefseqXP_016443576.10.0PREDICTED: homeobox-DDT domain protein RLT1-like isoform X1
TrEMBLA0A1S3XUM10.0A0A1S3XUM1_TOBAC; homeobox-DDT domain protein RLT1-like isoform X1
TrEMBLA0A1U7X8T70.0A0A1U7X8T7_NICSY; uncharacterized protein LOC104231943 isoform X2
STRINGXP_009783319.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03250.12e-70HB-other family protein