PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009783133.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 209aa    MW: 22850.1 Da    PI: 9.0259
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009783133.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.28.5e-132570150
             AP2  1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaar 50
                    s+y+GV+ +k  grW+A+       g    +k+++lg f+++ eAa+a+++a 
  XP_009783133.1 25 SKYRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDSEIEAARAYDKAD 70
                    89********.7******...5...334336**********99*******996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.91E-232582No hitNo description
SuperFamilySSF541717.85E-162584IPR016177DNA-binding domain
PfamPF008471.2E-82571IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-142683IPR001471AP2/ERF domain
PROSITE profilePS5103214.3022683IPR001471AP2/ERF domain
SMARTSM003803.1E-252689IPR001471AP2/ERF domain
PRINTSPR003675.2E-52738IPR001471AP2/ERF domain
PRINTSPR003675.2E-56585IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MNNFSNEKFV HILRRQSNGF SRGSSKYRGV TLHKCGRWEA RMGQLLGKKY IYLGLFDSEI  60
EAARAYDKAD IKSSGKEAVI NFGLSTYEDV LSSEADIGGT TRNLDLNLGI SPSSYADNQH  120
GNTSQIGNFQ GQHGSNGLPE HRRQDQNTNG GSPTVPFFST AASSRFDNSA ITAPPSAAIH  180
QLHFGSGALP YRHSQSLTNM NLSHNYCTS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2448866e-62AC244886.2 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone sle-19g7 map 10, complete sequence.
GenBankHG9754496e-62HG975449.1 Solanum pennellii chromosome ch10, complete genome.
GenBankHG9755226e-62HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009783133.11e-155PREDICTED: floral homeotic protein APETALA 2-like
RefseqXP_016452443.11e-155PREDICTED: floral homeotic protein APETALA 2-like
SwissprotB8AXC34e-49AP21_ORYSI; APETALA2-like protein 1
TrEMBLA0A1S3YK711e-154A0A1S3YK71_TOBAC; floral homeotic protein APETALA 2-like
TrEMBLA0A1U7WX071e-154A0A1U7WX07_NICSY; floral homeotic protein APETALA 2-like
STRINGXP_009783133.11e-155(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59124116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-50related to AP2.7