PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009782820.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | G2-like | ||||||||
Protein Properties | Length: 251aa MW: 28076.6 Da PI: 7.873 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 106.4 | 1.6e-33 | 46 | 99 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWt++LH+rFv+ave LGG+++AtPk +l+lm+vkgLt++hvkSHLQ+YR+ XP_009782820.1 46 PRLRWTQDLHRRFVHAVETLGGEDRATPKMVLQLMDVKGLTISHVKSHLQMYRS 99 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.058 | 42 | 102 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.5E-32 | 42 | 101 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.84E-16 | 44 | 100 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.3E-24 | 46 | 100 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 9.1E-8 | 47 | 98 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MMKEPLEFSE SSSKNSTSLS IENNTPMKDH SNKSGGVRPY VRSKMPRLRW TQDLHRRFVH 60 AVETLGGEDR ATPKMVLQLM DVKGLTISHV KSHLQMYRSM KHEQMIQAEA EAANGSKRNR 120 MDIGAANGNY HHYYNINDKA FFGAHPLSNV TSNYAELASI LPPAWKHMQE SKENKIMGLE 180 GKSNYSIMFR DFFNGCSVQD IGNRNKVVGE ASSLSNKSPS AEEEDISSST MSLEPSASFD 240 VNNLSLDLTL A |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 7e-18 | 47 | 102 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 7e-18 | 47 | 102 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 7e-18 | 47 | 102 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 7e-18 | 47 | 102 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 7e-18 | 47 | 102 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 7e-18 | 47 | 102 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 7e-18 | 47 | 102 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 7e-18 | 47 | 102 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009782820.1 | 0.0 | PREDICTED: transcription repressor KAN1-like | ||||
Refseq | XP_016460258.1 | 0.0 | PREDICTED: transcription repressor KAN1-like | ||||
TrEMBL | A0A1S3Z771 | 0.0 | A0A1S3Z771_TOBAC; transcription repressor KAN1-like | ||||
TrEMBL | A0A1U7X8P0 | 0.0 | A0A1U7X8P0_NICSY; transcription repressor KAN1-like | ||||
STRING | XP_009782820.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7450 | 20 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02060.1 | 2e-34 | G2-like family protein |