PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009782499.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | SBP | ||||||||
Protein Properties | Length: 307aa MW: 34836.2 Da PI: 8.3085 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 127.9 | 4e-40 | 156 | 232 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 Cq++gC+adl++ak+yhrrhkvCe+hska++v+++g++qrfCqqCsrfh+ls+fD++krsCr+rLa+hn+rrrk+q+ XP_009782499.1 156 CQADGCNADLTHAKHYHRRHKVCEFHSKAATVIAAGVTQRFCQQCSRFHDLSKFDNGKRSCRKRLADHNRRRRKNQQ 232 **************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 4.7E-33 | 151 | 217 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.735 | 153 | 230 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.05E-36 | 154 | 231 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 4.7E-31 | 156 | 229 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MLDYEWETGG EETTQETDQN DQFFDPFVNP LAHFSPIRNH LDQQQQQQIQ NHQFPQFQTT 60 PNNNHFSSLY NPHTYDVPYS QTHHTSMLSL QPTGSTGFNT VLPKSELQFM GGIDFTNTSR 120 IGLNLGGRTY FASSEDDFVN RLFRRTRAVE AGSPKCQADG CNADLTHAKH YHRRHKVCEF 180 HSKAATVIAA GVTQRFCQQC SRFHDLSKFD NGKRSCRKRL ADHNRRRRKN QQVINKKQPQ 240 QETASLSDKL NSTESGAHSS TVTVAISPPS NSMDCFRQRA YQLAASGGAT RWQGESIDTH 300 SSENYTA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 3e-31 | 151 | 229 | 6 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. Binds specifically to the 5'-GTAC-3' core sequence. Involved in development and floral organogenesis. Required for ovule differentiation, pollen production, filament elongation, seed formation and siliques elongation. Also seems to play a role in the formation of trichomes on sepals. May positively modulate gibberellin (GA) signaling in flower. {ECO:0000269|PubMed:12671094, ECO:0000269|PubMed:16095614, ECO:0000269|PubMed:17093870}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LC073297 | 0.0 | LC073297.1 Nicotiana tabacum NtabSPL8 mRNA for squamosa promoter binding protein NtabSPL8, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009782499.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 8 isoform X2 | ||||
Swissprot | Q8GXL3 | 4e-75 | SPL8_ARATH; Squamosa promoter-binding-like protein 8 | ||||
TrEMBL | A0A1U7X6I5 | 0.0 | A0A1U7X6I5_NICSY; squamosa promoter-binding-like protein 8 isoform X2 | ||||
STRING | XP_009782498.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02065.1 | 2e-71 | squamosa promoter binding protein-like 8 |
Publications ? help Back to Top | |||
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