PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009782009.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | AP2 | ||||||||
Protein Properties | Length: 466aa MW: 51444.9 Da PI: 8.076 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.3 | 7e-17 | 144 | 193 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g XP_009782009.1 144 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHTAARAYDRAAIKFRG 193 78*******************......55************************997 PP | |||||||
2 | AP2 | 39.8 | 1.1e-12 | 236 | 286 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+++GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a+ k +g XP_009782009.1 236 SKFRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIKTNG 286 79********.7******5553..2.26**********99**********98766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 8.5E-16 | 144 | 202 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.9E-9 | 144 | 193 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.90E-23 | 145 | 203 | No hit | No description |
SMART | SM00380 | 3.6E-32 | 145 | 207 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.8E-17 | 145 | 201 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.662 | 145 | 201 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.5E-8 | 236 | 284 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.66E-16 | 236 | 295 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 5.48E-24 | 236 | 296 | No hit | No description |
PROSITE profile | PS51032 | 15.277 | 237 | 294 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.2E-30 | 237 | 300 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.6E-15 | 237 | 294 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-5 | 238 | 249 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-5 | 276 | 296 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 466 aa Download sequence Send to blast |
MLDLNVNVIY DENYIVDEKL PEGSVADHES GTSNSSSLRN AEATSSAGGD DDTCSTRAGN 60 LFAFNFDILK FGGVDATSRS NAFVTRQLFP VHDGELNRPG QTDRVNFSSG RSGFGDERTV 120 LQQQPQQEKP QVKKSRRGPR SRSSQYRGVT FYRRTGRWES HIWDCGKQVY LGGFDTAHTA 180 ARAYDRAAIK FRGVDADINF SISDYEEDMK QMKDLGKEEF VHLLRRHSNG FSRGSSKFRG 240 VTLHKCGRWE ARMGQFLGKK YIYLGLFDSE VEAARAYDKA AIKTNGREAV TNFEPSAYQG 300 ETISEPQKEG SQPDLDLNLG MSTSSSKEND KLGGSYYHPY DMQDATKSKM DKPGPVIVGS 360 SHLKGLPMTS KQAHLWSGAY SNFSPTYEGR ASDKRKDTGS SLGPSNWAMQ MPTQVDTAPV 420 SMFYTAASSG FLTPASAFIT SSASPVAPST NASQYYYQFS PHVPPP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00615 | PBM | Transfer from AT2G28550 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ586954 | 0.0 | HQ586954.1 Solanum lycopersicum AP2 transcription factor SlAP2e mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009782007.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor TOE3 isoform X1 | ||||
Refseq | XP_009782008.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor TOE3 isoform X1 | ||||
Refseq | XP_009782009.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor TOE3 isoform X1 | ||||
Swissprot | Q9SK03 | 1e-105 | RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7 | ||||
TrEMBL | A0A1U7WQ03 | 0.0 | A0A1U7WQ03_NICSY; AP2-like ethylene-responsive transcription factor TOE3 isoform X1 | ||||
STRING | XP_009782007.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.3 | 1e-116 | related to AP2.7 |