PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009781754.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 308aa    MW: 34867.4 Da    PI: 6.1672
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009781754.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.69e-08326226
                    -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                    k++lC+ffar G C  G+ C F H+
  XP_009781754.1  3 KRVLCKFFAR-GACLKGEHCDFLHD 26
                    99********.*************6 PP
2zf-CCCH231.4e-073454526
                    --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                     C ++++ G+C +G+rC++ H+
  XP_009781754.1 34 VCTYYQK-GICAFGSRCRYEHV 54
                    5******.***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.328128IPR000571Zinc finger, CCCH-type
SMARTSM003564.3E-5127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-7326IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-4326IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-6329IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.312956IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-53153IPR000571Zinc finger, CCCH-type
SMARTSM003560.00223155IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-53454IPR000571Zinc finger, CCCH-type
SuperFamilySSF578503.53E-12115186No hitNo description
Gene3DG3DSA:3.30.40.101.9E-9115181IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001624.78E-4121181No hitNo description
PROSITE profilePS5008912.268122180IPR001841Zinc finger, RING-type
SMARTSM001849.6E-7122179IPR001841Zinc finger, RING-type
PfamPF000974.2E-7122179IPR018957Zinc finger, C3HC4 RING-type
PROSITE patternPS005180146155IPR017907Zinc finger, RING-type, conserved site
SMARTSM003560.079209237IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.54209238IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MSKRVLCKFF ARGACLKGEH CDFLHDSEDV PNNVCTYYQK GICAFGSRCR YEHVKITRSQ  60
PSLPSSSANI VELKRVNATD QSICSSSTAS NCPQGKKEEH MKTCETRENQ LDLLKHSQEI  120
ECGVCLERVL SKTIMAERKF GILSECDHPF CISCIRNWRS SSPSIGMNVN STLRACPVCR  180
KLSYFVIPSV IWYSTKEEKQ EIINSYKAKL RSIDCKNFDF GNGTCQFGAS CFYKHTVKPG  240
SKLWNSTLMP DLRGSSFLDA DETESGSDGD MESFRALFED YRDGDLEEFA EAMAFMLWLR  300
DSDTSDDE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009781754.10.0PREDICTED: zinc finger CCCH domain-containing protein 69-like isoform X1
RefseqXP_016512830.10.0PREDICTED: E3 ubiquitin-protein ligase makorin-like isoform X2
SwissprotE0X9N41e-104C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLA0A1S4DHI60.0A0A1S4DHI6_TOBAC; E3 ubiquitin-protein ligase makorin-like isoform X2
TrEMBLA0A1U7X4F30.0A0A1U7X4F3_NICSY; zinc finger CCCH domain-containing protein 69-like isoform X1
STRINGXP_009781754.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33862149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-105C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]