PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009781543.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 460aa    MW: 52711.3 Da    PI: 9.9552
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009781543.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.66.4e-151494599
                    -..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3  5 ltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                          +k++ l +pk f+ ++ +g ++e     +  + +++W vkl  ++++    l++GW++F+++++L+ gD ++F+++g++ef   v++f++
  XP_009781543.1 14 I--QPGFKRA-LKIPKGFL-KYlKGHEHE---HAVLKRGSKKWLVKL--NGQR----LEEGWEKFAEEHDLRLGDLLIFRHEGEMEF--EVTIFDS 94
                    4..4556666.9*******.564666444...57778899*******..8887....***********************9999999..9999986 PP
2B344.82.2e-14140221589
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     +++s+ +++g ++lp kf++++g  + ++  l+++de+ rsW++kl    + +++++++ W eF +an++k+gD ++Fk++ + e
  XP_009781543.1 140 TVRSYCFSKGYFRLPVKFTKANGFRN-KKYGLIIRDERQRSWNLKL--YTSYSQVYIGGKWGEFRDANDIKVGDRIMFKVVANGE 221
                     57899*****************5543.4467***************..66667889***********************887533 PP
3B355.51e-17285371596
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                     ++++++l+++ l++p +fa++hg+  ++  t++++d + rsW+++l    +++ +++++GW +F+ an LkegD v+F  +  +++++ +k+
  XP_009781543.1 285 TMKPYNLSKCFLRVPSPFARQHGLRDRK-CTIMIRD-EQRSWTFTL--YSCGKVTYIGGGWHDFCIANCLKEGDRVMFGIVA-NGEKPILKF 371
                     6799******************999766.5999999.779******..899999*************************876.555566665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.5E-21497IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-19597IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.294795IPR003340B3 DNA binding domain
CDDcd100172.34E-15893No hitNo description
SMARTSM010191.3E-161095IPR003340B3 DNA binding domain
PfamPF023628.3E-111994IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.0E-13134227IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.3E-9136231IPR003340B3 DNA binding domain
SuperFamilySSF1019364.71E-15136227IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.265136230IPR003340B3 DNA binding domain
PfamPF023621.1E-12140223IPR003340B3 DNA binding domain
CDDcd100176.68E-11142215No hitNo description
SuperFamilySSF1019363.92E-20277371IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.4E-20278371IPR015300DNA-binding pseudobarrel domain
CDDcd100172.53E-15280373No hitNo description
SMARTSM010193.6E-15281375IPR003340B3 DNA binding domain
PROSITE profilePS5086310.969281374IPR003340B3 DNA binding domain
PfamPF023626.6E-15284372IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MKVRPAKPHF FKPIQPGFKR ALKIPKGFLK YLKGHEHEHA VLKRGSKKWL VKLNGQRLEE  60
GWEKFAEEHD LRLGDLLIFR HEGEMEFEVT IFDSSHCDRE YAEYLQDEEE AHIVKDPSKK  120
FEIKEAAPQN PIGQSHVVCT VRSYCFSKGY FRLPVKFTKA NGFRNKKYGL IIRDERQRSW  180
NLKLYTSYSQ VYIGGKWGEF RDANDIKVGD RIMFKVVANG ERPIWKFHNL RKNASLQPEG  240
KNNSDIERVS TPEKPKSNII SSCKAVPNVE AAKDLHLGHP HFICTMKPYN LSKCFLRVPS  300
PFARQHGLRD RKCTIMIRDE QRSWTFTLYS CGKVTYIGGG WHDFCIANCL KEGDRVMFGI  360
VANGEKPILK FHDLRENASF QPEGKKTNSD TERVSTQDLR GNASLQPEGK KINLDAKNVS  420
TQGITDLTIQ TSNVTARKAQ VPASTSVDNA NTKTTLVYTM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754471e-61HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009781543.10.0PREDICTED: B3 domain-containing protein REM5-like isoform X3
TrEMBLA0A1U7WSI20.0A0A1U7WSI2_NICSY; B3 domain-containing protein REM5-like isoform X3
STRINGXP_009781505.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.11e-48B3 family protein