PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009781485.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 414aa    MW: 46484.9 Da    PI: 8.4402
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009781485.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.61.7e-19247295355
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     ++GVr+++ +g+WvAeIr p++   r+r++lg+f+taeeAa a++ a+  l+g
  XP_009781485.1 247 FRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTAEEAAIAYDTAAYILRG 295
                     8******9.**********955...5**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.92E-31245305No hitNo description
SMARTSM003801.1E-36246309IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.3E-31246304IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-22246304IPR016177DNA-binding domain
PROSITE profilePS5103222.234246303IPR001471AP2/ERF domain
PfamPF008473.0E-12247294IPR001471AP2/ERF domain
PRINTSPR003671.0E-10247258IPR001471AP2/ERF domain
PRINTSPR003671.0E-10269285IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MENQSLKSES LIQKELPTCY KEVAIESLSR YFKNPHILEG LNDESSITSF PNMKERLVSS  60
SDSTSSTKFS EFFPLNFLQN DQGNNNSIIP LNNFLESFHH HNQVSDHQTC SSPNSLSSNY  120
PTLGLFLKEP SILEISKRAE ESLNNKSHKT SAAIFPMSSL DESQIYQQQQ AAATTSTTNW  180
LKMNQTLTNC TTTKGFSDYW LSTTKTQPMK FTTGSRKSSL HYNQGNQKSS SSSSSSSLIA  240
TSQGKLFRGV RQRHWGKWVA EIRLPRNRTR VWLGTFDTAE EAAIAYDTAA YILRGDYAHL  300
NFPHLKNQLK ANSINGNTAA LLEAKIRAIS SQTKKANDHD QATKVVVLAT DDSTLKIKNV  360
MSQNQEMENS EKKVKNINQE RLLSENNIDG VQLSRMPSLD MDMIWDALLV SDSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-21242313168ATERF1
3gcc_A2e-21242313168ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009781485.10.0PREDICTED: ethylene-responsive transcription factor ERF062
TrEMBLA0A1U7X4U30.0A0A1U7X4U3_NICSY; ethylene-responsive transcription factor ERF062
STRINGXP_009781485.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA109211825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.14e-61ERF family protein