PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009781443.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family G2-like
Protein Properties Length: 465aa    MW: 52516.1 Da    PI: 6.2461
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009781443.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like857.7e-2773126155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k r++Wtp++H++F++a++qL G+ekA+Pk+i+e+m+ +gLt+ehv+SHLQkYR+
  XP_009781443.1  73 KRRVVWTPKMHQNFLQAIQQL-GHEKAVPKKIVEIMNEPGLTREHVASHLQKYRM 126
                     689******************.********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-2671130IPR009057Homeodomain-like
SuperFamilySSF466893.58E-1872130IPR009057Homeodomain-like
TIGRFAMsTIGR015574.6E-2573126IPR006447Myb domain, plants
PfamPF002495.4E-675125IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MALEKEKARK AAVNQEEDDY DNATRLPQNV TETNTENTSS ADSDVRAHDV KGKRKAYSDI  60
SEENGENRDI EKKRRVVWTP KMHQNFLQAI QQLGHEKAVP KKIVEIMNEP GLTREHVASH  120
LQKYRMCIKR AQESSAASIY DQILTNDAKE KCFQVQTYLS SLNLNATRGY SRSTQQPFQT  180
HFQQGTGGMN LRQPQMVSFP NMVSFQQQNS FLDFANSRKA EYHSGQIGQQ STFLPRIAHN  240
SNFRVYSDKR KNMLFSIQSG NANQPANSNS GLDFIGFRLS KDGKSVNFGH KGSSSAVISN  300
NTAYSGLCSS MSEDYIHKQQ RSPPFLETPN ENTLIQCSSA PPENFTIFNH PSNTISEQQN  360
LLLFDNAANK ITCQSTEMHV SFIPQEQLSA QQSSGDLEDY SAILFGDEVS VPPLENSGNY  420
DSRQQLYSVP DLPQEFNSLG TEIDIKCLLE IAENRSSQLF WEERF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-1671130362ARR10-B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15274KRKAYSDISEENGENRDIEKKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016480490.10.0PREDICTED: two-component response regulator ARR12-like
TrEMBLA0A1S4AV910.0A0A1S4AV91_TOBAC; two-component response regulator ARR12-like
STRINGXP_009781443.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36591620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.22e-23response regulator 1