PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009781263.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | B3 | ||||||||
Protein Properties | Length: 130aa MW: 15394.3 Da PI: 5.2589 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 32.7 | 1.3e-10 | 27 | 107 | 1 | 89 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+ v +++++ + + +++p++ +h ++ ++++ l + ++++W v + + +++r +++GWk+F +n +k g +v F+l++ s+ XP_009781263.1 27 FE-VVMTESYINYDDMYIPRNIY-KHL-PP--TVEIALFHYRSKEWFVSM--SVGDRR-RFKEGWKRFILDNYVKRGFVVKFTLVDVSS 107 44.455667777777*******9.663.32..468***************..555444.4899********************987555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.1E-13 | 21 | 110 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.28E-13 | 23 | 110 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.24E-9 | 25 | 110 | No hit | No description |
PROSITE profile | PS50863 | 9.911 | 26 | 116 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.0E-7 | 27 | 116 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.8E-9 | 27 | 108 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 130 aa Download sequence Send to blast |
MDASHSTKRC LTYSCTSEDE EENPPTFEVV MTESYINYDD MYIPRNIYKH LPPTVEIALF 60 HYRSKEWFVS MSVGDRRRFK EGWKRFILDN YVKRGFVVKF TLVDVSSLYV DFNVEVKGEG 120 THDRNSVEID |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009781263.1 | 2e-93 | PREDICTED: uncharacterized protein LOC104230220 isoform X1 | ||||
TrEMBL | A0A1U7WRQ1 | 5e-92 | A0A1U7WRQ1_NICSY; uncharacterized protein LOC104230220 isoform X1 | ||||
STRING | XP_009781263.1 | 9e-93 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06160.1 | 8e-07 | B3 family protein |