PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009780882.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 201aa MW: 22240.8 Da PI: 8.324 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.9 | 3.3e-20 | 25 | 75 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr ++ +gr++AeIrdp + +r++lg+f+tae+Aa+a++ a+++l+g XP_009780882.1 25 PRYRGVRKRP-WGRFAAEIRDPI----KkTRVWLGTFDTAEDAARAYDDAARALRG 75 68********.**********72....35*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 7.0E-14 | 25 | 75 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.69E-20 | 25 | 85 | No hit | No description |
PROSITE profile | PS51032 | 23.854 | 26 | 83 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.0E-33 | 26 | 84 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.6E-38 | 26 | 89 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-23 | 26 | 84 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.9E-11 | 27 | 38 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-11 | 49 | 65 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MRHRKSAEVN RRGSDLLKQP EADPPRYRGV RKRPWGRFAA EIRDPIKKTR VWLGTFDTAE 60 DAARAYDDAA RALRGPKAKT NFPNLAAITT QQDNNPYGSN QFELFPNSRP ASSSMSSTLE 120 SSSGPRGSGN KLTRMKIPRP VLPPEDCRSD CDSSSSVVDD RCDADQTSSF LPKQPLPFDL 180 NLPPPSDDVD ADDLHVTALC L |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-22 | 22 | 84 | 10 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009780882.1 | 1e-145 | PREDICTED: ethylene-responsive transcription factor 3-like | ||||
Refseq | XP_016484123.1 | 1e-145 | PREDICTED: ethylene-responsive transcription factor 3-like | ||||
Swissprot | Q9SXS8 | 6e-35 | ERF3_TOBAC; Ethylene-responsive transcription factor 3 | ||||
TrEMBL | A0A1S4B5Q2 | 1e-144 | A0A1S4B5Q2_TOBAC; ethylene-responsive transcription factor 3-like | ||||
TrEMBL | A0A1U7WLN7 | 1e-144 | A0A1U7WLN7_NICSY; ethylene-responsive transcription factor 3-like | ||||
STRING | XP_009780882.1 | 1e-145 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13779 | 11 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20310.1 | 6e-22 | ethylene response factor 7 |