PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009780206.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | VOZ | ||||||||
Protein Properties | Length: 477aa MW: 53258.2 Da PI: 6.152 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 412.4 | 8.5e-127 | 198 | 417 | 1 | 217 |
VOZ 1 pppsaflgpkcalwdctrpaqgsewl...qdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwna 92 pp saflgpkcalwdc+rpa gs+w+ qdycs +ha+la neg pg pv+rp gi+lkd+llf+al ak++gk+vg+pecegaatakspwna XP_009780206.1 198 PPASAFLGPKCALWDCPRPAMGSDWCqksQDYCSDYHASLAPNEGYPGRPPVVRPMGIGLKDNLLFQALGAKAHGKDVGVPECEGAATAKSPWNA 292 789**********************944459**************************************************************** PP VOZ 93 aelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrlel 187 +elfdl+++egetirewlffdkprrafesgnrkqrslpdy+grgwhesrkq+m+efgglkrsyymdpqp++++ewhlyeyein++da+alyrlel XP_009780206.1 293 PELFDLKVVEGETIREWLFFDKPRRAFESGNRKQRSLPDYNGRGWHESRKQMMNEFGGLKRSYYMDPQPMKNLEWHLYEYEINKYDACALYRLEL 387 *********************************************************************************************** PP VOZ 188 klvdekksakgkvskdsladlqkklgrlta 217 klvd+kk +kgkv++ s++dlqk++grlta XP_009780206.1 388 KLVDGKKIPKGKVTNVSVSDLQKQMGRLTA 417 ****************************97 PP |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009631 | Biological Process | cold acclimation | ||||
GO:0009816 | Biological Process | defense response to bacterium, incompatible interaction | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048578 | Biological Process | positive regulation of long-day photoperiodism, flowering | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 477 aa Download sequence Send to blast |
MRKVSKRGAC KSASHQLFKD RAKNRVDDLQ GVLTNLQSAR KESRSYDVGL LEEQVHQMLR 60 EWKAELNEPS PASSLQGGSL VSSSDIYRLL LGEEEDDATS PLAAPKPEPD AQKVSVTGFQ 120 EGFNATQVLQ EQGFHLVDQC KGLPLVVNNA GINNLGIATH LDYHSFDLHQ EYDQQYLPGF 180 DALNLCLEDA LPPIHISPPA SAFLGPKCAL WDCPRPAMGS DWCQKSQDYC SDYHASLAPN 240 EGYPGRPPVV RPMGIGLKDN LLFQALGAKA HGKDVGVPEC EGAATAKSPW NAPELFDLKV 300 VEGETIREWL FFDKPRRAFE SGNRKQRSLP DYNGRGWHES RKQMMNEFGG LKRSYYMDPQ 360 PMKNLEWHLY EYEINKYDAC ALYRLELKLV DGKKIPKGKV TNVSVSDLQK QMGRLTAEFP 420 LDNKRTVKGR AKAANLKNVG NIQAAPIPMV PSCEGFDYGT GEPYDYLVDD LDGYFIT |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By far-red light. {ECO:0000269|PubMed:22904146}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT014516 | 0.0 | BT014516.1 Lycopersicon esculentum clone 133906R, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009780205.1 | 0.0 | PREDICTED: transcription factor VOZ1-like | ||||
Refseq | XP_009780206.1 | 0.0 | PREDICTED: transcription factor VOZ1-like | ||||
Refseq | XP_009780207.1 | 0.0 | PREDICTED: transcription factor VOZ1-like | ||||
Refseq | XP_016472599.1 | 0.0 | PREDICTED: transcription factor VOZ1-like | ||||
Refseq | XP_016472601.1 | 0.0 | PREDICTED: transcription factor VOZ1-like | ||||
Refseq | XP_016472602.1 | 0.0 | PREDICTED: transcription factor VOZ1-like | ||||
Swissprot | Q9SGQ0 | 0.0 | VOZ1_ARATH; Transcription factor VOZ1 | ||||
TrEMBL | A0A1S4A7N1 | 0.0 | A0A1S4A7N1_TOBAC; transcription factor VOZ1-like | ||||
TrEMBL | A0A1U7WSB8 | 0.0 | A0A1U7WSB8_NICSY; transcription factor VOZ1-like | ||||
STRING | XP_009780205.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G28520.2 | 0.0 | vascular plant one zinc finger protein |
Publications ? help Back to Top | |||
---|---|---|---|
|