PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009779732.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 603aa    MW: 67639 Da    PI: 5.9111
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009779732.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.64.7e-13418461755
                     HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     + ErrRR++iN++f  L ++lP+      +K++K++ L +++eY+k+L+
  XP_009779732.1 418 ISERRRREKINERFMHLASMLPTG-----GKVDKISLLDETIEYMKELE 461
                     78*********************8.....8****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.4E-3615168IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088815.923411460IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.48E-12414465No hitNo description
SuperFamilySSF474596.54E-16415472IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-16416472IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.8E-16417466IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-10418461IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0010091Biological Processtrichome branching
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 603 aa     Download sequence    Send to blast
MAMGHQDQDG VPNNLRKQLA LAVRGIQWSY AIFWSTPVTQ PGVLEWSDGY YNGDIKTRKT  60
VQVGEVNEDQ LGLHRTEQLR ELYSSLLTGE GEEDLQPQAK RPSAALSPED LTDTEWYFLV  120
CMSFVFNVGQ GLPGKTSATN QTIWLCNAHQ AESRVFSRSL LAKSASIQVL EDPNLIQQIK  180
NSFEVDHSVI SKRPNYNSND AKDDMNVASR KLDHNVLESD AYPVEINNSS PHDSSNGFVA  240
NQEAEDSLMV VGVIGETSQA QSWKFVDDNM SNGVHNSLNS SDCISQNYEK LSPLSSGEKE  300
TKPCPIDREE HNQNKLHLLD HQGDDAQYQA VISKLLKSSD QLTLGPHFRN INKKSSFAGW  360
KNDTEAPRIG TAQKLLKKVL LEVPRMHGGV THKFSRENRK KNGLWRPEVD DIDRSRVISE  420
RRRREKINER FMHLASMLPT GGKVDKISLL DETIEYMKEL ERRVQELEAR SGKKTNDTAE  480
QTSDNCGTSK FNDVNGSLKR KACDMDEMEP ESCNELLKGS SADGIVISMI DKEVSIKMRC  540
LWSEGLLLKI MEALTDLQMD CHTVQSSKID GILSIAIESK SNGLKTVSVG AIREVLQRVV  600
WKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rru_A4e-111614851177Transcription factor MYC3
4ywc_A4e-111614851177Transcription factor MYC3
4ywc_B4e-111614851177Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1419424ERRRRE
2420425RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF3057690.0KF305769.1 Nicotiana tabacum cultivar SamsunNN JAF13-like protein (JAF13b) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009779732.10.0PREDICTED: transcription factor GLABRA 3-like isoform X3
TrEMBLA0A1U7WIG40.0A0A1U7WIG4_NICSY; transcription factor GLABRA 3-like isoform X3
STRINGXP_009779730.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-158bHLH family protein