PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009778971.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | B3 | ||||||||
Protein Properties | Length: 248aa MW: 28809.9 Da PI: 10.2585 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 48.3 | 1.9e-15 | 64 | 153 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f k +++s+v++ +l+lp+ f++ h ++ ++t+tl des ++++ k+ ++++ l++GW++F a++L egD++ F+l + + l+v XP_009778971.1 64 FMKPMIRSNVTAGFWLSLPRFFCQLHL--PRHDTTVTLVDESQEEYKTKYLAERNG----LSGGWRGFSLAHNLVEGDVLGFQLFRFCK--LKVY 150 89*********************8884..35678****************555555....9**********************865344..4777 PP EE- CS B3 96 vfr 98 ++r XP_009778971.1 151 IVR 153 766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.0E-18 | 56 | 155 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.75E-21 | 57 | 155 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.28E-22 | 62 | 153 | No hit | No description |
Pfam | PF02362 | 1.2E-13 | 64 | 154 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.6E-18 | 64 | 155 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.575 | 64 | 155 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MKDMSLRLQG THKQVFCKKP KKRRSCKNKM AMMQNLYGRF DLASSAKYRA EEVQSRLSTK 60 YPSFMKPMIR SNVTAGFWLS LPRFFCQLHL PRHDTTVTLV DESQEEYKTK YLAERNGLSG 120 GWRGFSLAHN LVEGDVLGFQ LFRFCKLKVY IVRANYLAEV DAALVLLHLD AHQKQANPEQ 180 CTKCRIIEVR NKVESSVKDF PHNEKRMIIL QKKTCYTNIV IQGICSRILT CLQKLQDLPT 240 KILALWML |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009778971.1 | 0.0 | PREDICTED: B3 domain-containing protein At5g42700-like isoform X4 | ||||
Swissprot | Q1G3M3 | 9e-41 | Y3918_ARATH; B3 domain-containing protein At3g19184 | ||||
TrEMBL | A0A1U7WNU3 | 0.0 | A0A1U7WNU3_NICSY; B3 domain-containing protein At5g42700-like isoform X4 | ||||
STRING | XP_009778967.1 | 1e-131 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 2e-42 | B3 family protein |
Publications ? help Back to Top | |||
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