PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009778966.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Protein Properties

Length: 448aa MW: 50401 Da PI: 7.9126

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009778966.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	57.7	2.1e-18	89	179	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k +++s+v++ +l++p+kf++++ + + + t++l de+ +++ k+ ++k++ l++GW++F +++L egD++vF+l++ +f +v XP_009778966.1 89 FVKYMLHSHVSRGFWLSFPRKFCNSYL-P-KHDATVVLVDENEKEFATKYLIDKNG----LSGGWRGFSIDHNLLEGDVLVFQLIQPCKF--KVY 175 8999*****************9994.3.35679***********889998....***********************98888..888 PP EE-S CS B3 96 vfrk 99 ++r+ XP_009778966.1 176 IIRE 179 8875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	6.6E-21	83	180	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.35E-25	83	180	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	5.84E-27	87	178	No hit	No description
PROSITE profile	PS50863	12.506	89	180	IPR003340	B3 DNA binding domain
SMART	SM01019	3.2E-21	89	180	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.3E-16	89	179	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 448 aa Download sequence Send to blast
MAISAMNSSK KSPLLSSSKK RALEIKEKLV RKRALGPSKT NKVKNGDTKK LQICPEKKTY 60 KTSTVDANSS TMLRAEEVQA NLPSQFPSFV KYMLHSHVSR GFWLSFPRKF CNSYLPKHDA 120 TVVLVDENEK EFATKYLIDK NGLSGGWRGF SIDHNLLEGD VLVFQLIQPC KFKVYIIREN 180 NLTEIDGAIS LLNLDLHARP VKSDQIEDMK ICEAKERKYS EPSVLDTHQD VKQEEAILIP 240 ESDQGRASEQ CGNDSDNGSE VLSIRFSESR LEFKDVNDFS GFNILVDGLI IDAEIPAHIR 300 TKYYDLCCTQ KSFLHDHLLG GLNCKLAAGM ITETVNIADA IRASKISIPR DYLDTWDNTL 360 KGFECLGMKV GFLRARLSKL ISMSCDSDNI LVAKRVELAE AKEEIRNLEE KVLKVKQVIK 420 KLDSEIEALA VKDTSFELKF KAVAAAPW

Sequence ? help Back to Top

Protein Sequence Length: 448 aa Download sequence Send to blast

MAISAMNSSK KSPLLSSSKK RALEIKEKLV RKRALGPSKT NKVKNGDTKK LQICPEKKTY  60
KTSTVDANSS TMLRAEEVQA NLPSQFPSFV KYMLHSHVSR GFWLSFPRKF CNSYLPKHDA  120
TVVLVDENEK EFATKYLIDK NGLSGGWRGF SIDHNLLEGD VLVFQLIQPC KFKVYIIREN  180
NLTEIDGAIS LLNLDLHARP VKSDQIEDMK ICEAKERKYS EPSVLDTHQD VKQEEAILIP  240
ESDQGRASEQ CGNDSDNGSE VLSIRFSESR LEFKDVNDFS GFNILVDGLI IDAEIPAHIR  300
TKYYDLCCTQ KSFLHDHLLG GLNCKLAAGM ITETVNIADA IRASKISIPR DYLDTWDNTL  360
KGFECLGMKV GFLRARLSKL ISMSCDSDNI LVAKRVELAE AKEEIRNLEE KVLKVKQVIK  420
KLDSEIEALA VKDTSFELKF KAVAAAPW

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009778966.1	0.0	PREDICTED: B3 domain-containing protein Os01g0234100-like
TrEMBL	A0A1U7WNT8	0.0	A0A1U7WNT8_NICSY; B3 domain-containing protein Os01g0234100-like
STRING	XP_009778966.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3023	23	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	3e-40	B3 family protein