PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009778804.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ARF | ||||||||
Protein Properties | Length: 926aa MW: 102503 Da PI: 5.3488 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 78.1 | 9.7e-25 | 146 | 247 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae+ ++++++ ++l+++d+++++W++++iyr++++r++lt+GW+ Fv a++L++gD+v+F ++++ XP_009778804.1 146 FCKTLTASDTSTHGGFSVPRRAAEKLfppldySMQPPT-QELVVRDLHNNTWTFRHIYRGQPKRHLLTTGWSMFVGAKRLRAGDSVLFI--RDEK 237 99*********************999*****9555554.49************************************************..4567 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +l+++v+r+ XP_009778804.1 238 SQLMLGVRRA 247 778***9997 PP | |||||||
2 | Auxin_resp | 118.4 | 5.9e-39 | 272 | 355 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPra++seFv++++k++k+++ +++svGmRf m+fete+s +rr++Gt+vg+sdldp+rWp+SkWr+L+ XP_009778804.1 272 AAHAAANRSTFTIFYNPRACPSEFVIPLAKYRKSVYgTQLSVGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRCLQ 355 79**********************************9**********************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.75E-47 | 133 | 275 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.7E-42 | 139 | 260 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.78E-23 | 145 | 246 | No hit | No description |
SMART | SM01019 | 1.0E-24 | 146 | 248 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.6E-22 | 146 | 247 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.324 | 146 | 248 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 7.4E-34 | 272 | 355 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 2.1E-9 | 805 | 899 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 26.192 | 813 | 897 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 3.27E-9 | 826 | 892 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0010305 | Biological Process | leaf vascular tissue pattern formation | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0048507 | Biological Process | meristem development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 926 aa Download sequence Send to blast |
MGSVEEKHKP GSLVSGAHTL LEEMKLLKEM QDHSGGRKLI NSELWHTCAG PLVTLPQVGS 60 LVYYFPQGHS EQVAVSTNRT ATSQIPNYPN LASQLLCQVH NVTLHADKET DEIYAQMSLQ 120 PVNSEKDVFP IPDFGLKPSK HPTEFFCKTL TASDTSTHGG FSVPRRAAEK LFPPLDYSMQ 180 PPTQELVVRD LHNNTWTFRH IYRGQPKRHL LTTGWSMFVG AKRLRAGDSV LFIRDEKSQL 240 MLGVRRANRQ QTSLPSSVLS ADSMHIGVLA AAAHAAANRS TFTIFYNPRA CPSEFVIPLA 300 KYRKSVYGTQ LSVGMRFGMM FETEESGKRR YMGTIVGISD LDPLRWPGSK WRCLQAEWDE 360 PGCGDKQSRV SPWEVETPES LFIFPSLTAG LKRPYQSSFL GAQTEWDSLM HRPFMRVPEN 420 VYGELQISSI SNLWSEQLMK MLARPPGVTG LQCGVPTVQD IKVALPQESR NLIHAAGNQK 480 PELSTVEDTS VQSERNPQVI LNQPCVVNSI SSPQATLQPK SQPPEKVGSD TVGISSEQAK 540 ETSVSVDRLD QCQSLGQCND EKVTIKPASP HILPTDATAS HQNSLSQLQS SPWRQIEAAS 600 ANNILQCSNN NEWNLPFQST AGLLRSPVSN STLTKHEHSF MLPDSVIGPG LAPIGQDLWD 660 HQLNDVKCFS QTNLQVPLLT QDITNMQFLP DSYGFKDLSE ESHNQSDIYS CLNFDSNSGS 720 TVIDNSVSST VLDEFCTLKH TDFQSPSDFL LGNFSSSQDV QSQITSASLA DSQNFSVQDF 780 ADNSGGASSS NVNFDESNLL QNSSWQQVAP RVRTYTKIQK AGSVGRSIDV SSFKTYDELR 840 SEIERMFGLE GLLNDTRGSG WKLVYVDYEN DVLLVGDDPW EEFVGCVRCI RILSPTEVQQ 900 MGEEGMQLLN SAGLQDINGS TSEFPN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 0.0 | 1 | 380 | 5 | 392 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Mediates embryo axis formation and vascular tissues differentiation. Functionally redundant with ARF7. May be necessary to counteract AMP1 activity. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:14973283, ECO:0000269|PubMed:17553903}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00153 | DAP | Transfer from AT1G19850 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HM195248 | 0.0 | HM195248.1 Solanum lycopersicum auxin response factor 5 (ARF5) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009778804.1 | 0.0 | PREDICTED: auxin response factor 5 | ||||
Refseq | XP_009778805.1 | 0.0 | PREDICTED: auxin response factor 5 | ||||
Refseq | XP_009778806.1 | 0.0 | PREDICTED: auxin response factor 5 | ||||
Swissprot | P93024 | 0.0 | ARFE_ARATH; Auxin response factor 5 | ||||
TrEMBL | A0A1U7WX33 | 0.0 | A0A1U7WX33_NICSY; Auxin response factor | ||||
STRING | XP_009778804.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5859 | 23 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19850.1 | 0.0 | ARF family protein |