PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009778393.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

SRS

Protein Properties

Length: 333aa MW: 36363.1 Da PI: 7.2143

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009778393.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	214.4	2.7e-66	106	251	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaesk 97 g++sCqdCGnqakkdC+h+RCRtCCksrg++C+thv+stWvpaakrre+qqq a++++++ +++++++kr++++ + s+l +t+l+s+++ XP_009778393.1 106 GGGISCQDCGNQAKKDCQHMRCRTCCKSRGLQCQTHVRSTWVPAAKRREKQQQIASLQQQE--HRDNNNPKRQKDD--PSGSSLVCTRLPSNTA- 195 5789************************************************9997666..4466677777776..78999**99975. PP DUF702 98 keletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 le+ ++P++v+s+avf++vr+ss+++ e+++aYqtav+igGh+fkGiLydqGle+ XP_009778393.1 196 -GLEVGNFPSKVNSTAVFHRVRMSSIEETEDQIAYQTAVNIGGHIFKGILYDQGLES 251 .589999*********************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	9.2E-61	108	250	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	7.8E-27	110	152	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	4.7E-25	202	249	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009938	Biological Process	negative regulation of gibberellic acid mediated signaling pathway
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MAGFFSLGGG RETSQEQHHQ ETTNHHNPEN NWFLYRNHDQ ELPVYKGFEL WQQQDEQQNY 60 QIRNPIINPL QDLYPTSAIG LGVGPTATDH GASRSAAFVM MRSSSGGGIS CQDCGNQAKK 120 DCQHMRCRTC CKSRGLQCQT HVRSTWVPAA KRREKQQQIA SLQQQEHRDN NNPKRQKDDP 180 SGSSLVCTRL PSNTAGLEVG NFPSKVNSTA VFHRVRMSSI EETEDQIAYQ TAVNIGGHIF 240 KGILYDQGLE SQYNMNATTG DSSSGGTEPV VPHQHNLIGA TTSAATSNAV ASGGGSTAAA 300 EGSHFLEHSI YSAPLINTFM AAGTQFFPPP ARS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:24142382). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371, PubMed:24142382). Acts synergistically with MYC1 in the transactivation of TPS5 (PubMed:24884371). {ECO:0000269\|PubMed:24142382, ECO:0000269\|PubMed:24884371}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975442	1e-67	HG975442.1 Solanum pennellii chromosome ch03, complete genome.
GenBank	KC331911	1e-67	KC331911.1 Solanum lycopersicum expression of terpenoids 2 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009778393.1	0.0	PREDICTED: protein SHI RELATED SEQUENCE 1-like
Refseq	XP_016477618.1	0.0	PREDICTED: protein SHI RELATED SEQUENCE 1-like
Swissprot	K4B6C9	1e-118	EOT1_SOLLC; Protein EXPRESSION OF TERPENOIDS 1
TrEMBL	A0A1S4AMG2	0.0	A0A1S4AMG2_TOBAC; protein SHI RELATED SEQUENCE 1-like
TrEMBL	A0A1U7WIB5	0.0	A0A1U7WIB5_NICSY; protein SHI RELATED SEQUENCE 1-like
STRING	XP_009778393.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA678	24	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66350.1	1e-78	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]