PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009778344.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bZIP
Protein Properties Length: 135aa    MW: 16066.2 Da    PI: 9.3098
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009778344.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_139.89.5e-131371563
                    CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
                    ++ +r+ +NRe+ArrsR RK++ +      v++L++eN + +  ++  ++++a++++e+
  XP_009778344.1 13 RKRKRMVSNRESARRSRMRKQKHLYDMMSQVEQLKEENIKIITSINLATQNYATVEAEN 71
                    57799***********************************************9999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1708.8E-10859No hitNo description
SMARTSM003382.8E-13973IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.2771174IPR004827Basic-leucine zipper domain
PfamPF001707.4E-101371IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.13E-111365No hitNo description
CDDcd147029.53E-181465No hitNo description
PROSITE patternPS0003601631IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MTSSSSGDLM NERKRKRMVS NRESARRSRM RKQKHLYDMM SQVEQLKEEN IKIITSINLA  60
TQNYATVEAE NTVLRVQMME LNQRLHSLND ILSYINNNGT IFEDHNYPET FVNNPWNFMY  120
QNQPIMASAH MLYHY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11233RKRKRMVSNRESARRSRMRKQK
22532RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009778344.11e-96PREDICTED: ocs element-binding factor 1-like
RefseqXP_016452795.11e-96PREDICTED: bZIP transcription factor 53-like
SwissprotC0Z2L55e-40BZP44_ARATH; bZIP transcription factor 44
TrEMBLA0A1S3YL183e-95A0A1S3YL18_TOBAC; bZIP transcription factor 53-like
TrEMBLA0A1U7WUG93e-95A0A1U7WUG9_NICSY; ocs element-binding factor 1-like
STRINGXP_009778344.14e-96(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53724123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.12e-42basic leucine-zipper 44
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]