PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009776947.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 264aa    MW: 29604.5 Da    PI: 6.7439
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009776947.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.24.6e-18176210135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++C + kTp+WR gp g+ktLCnaCG+++++ +l
  XP_009776947.1 176 CTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRL 210
                     *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.8E-812254IPR016679Transcription factor, GATA, plant
Gene3DG3DSA:3.30.50.106.0E-14169207IPR013088Zinc finger, NHR/GATA-type
SMARTSM004016.5E-16170220IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.266170206IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.08E-15171234No hitNo description
CDDcd002029.52E-14175222No hitNo description
PROSITE patternPS003440176201IPR000679Zinc finger, GATA-type
PfamPF003207.3E-16176210IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MDVYGVSAPD LFRIDDLLDF SNDEIFSINS NSSSTTATPD SQHHHHHLHQ PHSDNSSAAT  60
ANYYDALLPN CSDDFTDNLC VPSDDVAELE WLSNFVEDSF SSFPTNSVTG TMNLSSNTTA  120
SFHGRSRSKR SRSTSSWTSS LQNPNTTTTT TMKNKEISVY TRERSSSMDD DVPRRCTHCA  180
SEKTPQWRTG PLGPKTLCNA CGVRFKSGRL VPEYRPAASP TFVLTQHSNS HRKVMELRRQ  240
KEMIHQQPPP PTEEGMYGHH FRVC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124129RSRSKR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00415DAPTransfer from AT3G60530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1076910.0AB107691.1 Nicotiana tabacum AGP3 mRNA for AG-motif binding protein-3, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009776947.10.0PREDICTED: GATA transcription factor 4
RefseqXP_016447001.10.0PREDICTED: GATA transcription factor 4-like
SwissprotO497435e-73GATA4_ARATH; GATA transcription factor 4
TrEMBLA0A1S3Y4C90.0A0A1S3Y4C9_TOBAC; GATA transcription factor
TrEMBLA0A1U7WAC90.0A0A1U7WAC9_NICSY; GATA transcription factor
STRINGXP_009776947.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57761935
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.15e-63GATA transcription factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]