PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009776871.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WOX
Protein Properties Length: 235aa    MW: 26738.1 Da    PI: 9.3574
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009776871.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.43.9e-2196155357
                     --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                     +R+++t+eq+ +Le l++   r+p+a+++e+++ +l    +++ ++V++WFqN++a+e++
  XP_009776871.1  96 TRWNPTQEQIGILEMLYRGgMRTPNAQQIEQITVQLgkygKIEGKNVFYWFQNHKARERQ 155
                     7*****************99**************************************97 PP
2Wus_type_Homeobox117.18e-3896157465
  Wus_type_Homeobox   4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        tRW+Pt+eQi iLe+ly+ G+rtPn+++i++it +L +yGkie+kNVfyWFQN+kaRerqkq
     XP_009776871.1  96 TRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITVQLGKYGKIEGKNVFYWFQNHKARERQKQ 157
                        8***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.15E-1291161IPR009057Homeodomain-like
PROSITE profilePS5007110.0991156IPR001356Homeobox domain
SMARTSM003893.6E-793160IPR001356Homeobox domain
PfamPF000468.4E-1996155IPR001356Homeobox domain
CDDcd000864.91E-596157No hitNo description
Gene3DG3DSA:1.10.10.609.7E-897155IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0007165Biological Processsignal transduction
GO:0010067Biological Processprocambium histogenesis
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MYMGSSSGSL SMKVHQFTRG LILEHDSAAP SLTLGCKRLR PLAPKLSSCT NDPSIVTPPF  60
DLKSFIRPES STSPGKTSFN DDKKDSSQVE SHPGGTRWNP TQEQIGILEM LYRGGMRTPN  120
AQQIEQITVQ LGKYGKIEGK NVFYWFQNHK ARERQKQKRN SLGLSQSPRT PPAIVTSPLS  180
FDTRGEVVRE EDSPYKRKCR GWTYEYLEEE EKRNCREDNG DRTLELFPLH PEGMR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU3590060.0EU359006.1 Petunia x hybrida WOX4 (WOX4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009776871.11e-176PREDICTED: WUSCHEL-related homeobox 4
RefseqXP_016488708.11e-176PREDICTED: WUSCHEL-related homeobox 4-like
SwissprotQ6X7J93e-77WOX4_ARATH; WUSCHEL-related homeobox 4
TrEMBLA0A1S4BIK01e-175A0A1S4BIK0_TOBAC; WUSCHEL-related homeobox 4-like
TrEMBLA0A1U7WHY01e-175A0A1U7WHY0_NICSY; WUSCHEL-related homeobox 4
STRINGXP_009776871.11e-176(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA61862335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46480.12e-78WUSCHEL related homeobox 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Dolzblasz A, et al.
    Stem Cell Regulation by Arabidopsis WOX Genes.
    Mol Plant, 2016. 9(7): p. 1028-39
    [PMID:27109605]
  3. Guo X, et al.
    Identification of cyst nematode B-type CLE peptides and modulation of the vascular stem cell pathway for feeding cell formation.
    PLoS Pathog., 2017. 13(2): p. e1006142
    [PMID:28158306]
  4. Denis E, et al.
    WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis.
    Plant J., 2017. 90(3): p. 560-572
    [PMID:28218997]
  5. Kucukoglu M,Nilsson J,Zheng B,Chaabouni S,Nilsson O
    WUSCHEL-RELATED HOMEOBOX4 (WOX4)-like genes regulate cambial cell division activity and secondary growth in Populus trees.
    New Phytol., 2017. 215(2): p. 642-657
    [PMID:28609015]
  6. Yamaguchi YL, et al.
    Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots.
    Front Plant Sci, 2017. 8: p. 1195
    [PMID:28747918]