PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009776059.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | FAR1 | ||||||||
Protein Properties | Length: 691aa MW: 79811.9 Da PI: 6.7472 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 77.5 | 2.6e-24 | 70 | 161 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 ++Y+++A++ GFs+rk++s++s++ g i++r+fvC+++g+++++kk+++++ r r++ r+gC+akl ++ke ++w+v+++++ HnHel XP_009776059.1 70 EYYSNFARKNGFSIRKARSTESQNLG-IYRRDFVCYRSGFNQPRKKANVEHPRDRKSVRCGCDAKLYLTKEIvdgVAQWYVSQFSNVHNHELL 161 69********************8888.******************************************998766789*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.4E-22 | 70 | 161 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 3.0E-24 | 293 | 385 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.78 | 565 | 600 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 2.5E-5 | 573 | 596 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 0.0015 | 575 | 602 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 691 aa Download sequence Send to blast |
MAAKPLNNIW IRRQQCPCGD WKCYIKADGD DQAVYVSLTT KSETASSSSQ DAVFTPYVGQ 60 IFKSDDEAFE YYSNFARKNG FSIRKARSTE SQNLGIYRRD FVCYRSGFNQ PRKKANVEHP 120 RDRKSVRCGC DAKLYLTKEI VDGVAQWYVS QFSNVHNHEL LEDDQVRLLP AYRKIQEADQ 180 ERILLLSKAG FPVNRIVKVL ELEKGVQPGH LPFIEKDVRN FVRTCKKTVQ ENDALMTEKR 240 ENDLLELLEA CKASQQKDEG FIYSFTTDDN GRVENIAWSY GHSLRAYSFF GDVMTFDTTY 300 RSITYNMVLG VLFGIDNNGN AIFLGCVLLQ DETSQSFSWA LQSFVRFMRG KQPETIVTDI 360 DSGLRDAIAS EMPNTKHVIC LWQVLSKLSS WFSLPLGLQY PDFKSEFDML CRLENVEDFE 420 HQWNHLVARF GVGSDKHIAL LLSYRTSWPI SYTRNFFLAR TMTIEYWKLI ETFMKNILSP 480 QSSLLLFFEQ VGLASNFGNH NKEKRLYMPA KTCLPLEEHA RSVLTPYAFD VMQHEIMLSM 540 QYAITEMANS SYLARHYKKM EAECLVIWIP EDEEVHCSCK EFEHSGILCR HSIRMLVSKN 600 YFQIPAKYFP LRWRLESSLA PPDESVIQSS SDEYSQVFHA LSGSLYSESL ISKQRVNYVN 660 RELKKLLENV QNMPTVDEIV VSSAPINVRE L |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975446 | 0.0 | HG975446.1 Solanum pennellii chromosome ch07, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009776059.1 | 0.0 | PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 | ||||
Refseq | XP_009776060.1 | 0.0 | PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 | ||||
Swissprot | Q9LKR4 | 0.0 | FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10 | ||||
TrEMBL | A0A1U7WN20 | 0.0 | A0A1U7WN20_NICSY; Uncharacterized protein | ||||
STRING | XP_009776059.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7532 | 19 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28530.1 | 0.0 | FAR1-related sequence 10 |
Publications ? help Back to Top | |||
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