PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009775416.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bZIP | ||||||||
Protein Properties | Length: 341aa MW: 36621.1 Da PI: 5.942 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 76.1 | 4.5e-24 | 242 | 304 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkr++rkq+NRe+ArrsR+RK+ae+eeL+++v++L++eN+aLk+e+ +l++e++kl+se+ XP_009775416.1 242 ERELKRQKRKQSNRESARRSRLRKQAECEELQQRVETLSNENHALKEEMRKLSEECEKLTSEN 304 89***********************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07777 | 3.8E-30 | 1 | 93 | IPR012900 | G-box binding protein, multifunctional mosaic region |
Gene3D | G3DSA:1.20.5.170 | 2.2E-19 | 237 | 301 | No hit | No description |
SMART | SM00338 | 4.2E-22 | 242 | 306 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.4E-21 | 242 | 304 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 13.507 | 244 | 307 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 3.19E-11 | 245 | 301 | No hit | No description |
CDD | cd14702 | 2.25E-23 | 247 | 297 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 249 | 264 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence Send to blast |
MGAGEESTPA KPSKATSTQE TQATPSYPDW SSSMQAYYGA GAAPHFFSPT VASPTPHPYM 60 WGGQHPLMPP YGAPVPYPAL YPPTGVYAHP NMPMTPNPLQ ANPESDSKAP DPKDQSTSKK 120 LKGYTGGKAG ESGKATSGSG NDGATRSAES GSEGSSDAND ENDNHEFSAN KSRNFDLMLA 180 NGASSQNNPA TGNPVAMPAT NLNIGMDLWN ASSAGPGMIK MRSNQSGVAP APGIGREWIQ 240 DERELKRQKR KQSNRESARR SRLRKQAECE ELQQRVETLS NENHALKEEM RKLSEECEKL 300 TSENNSIKEE LTRLCGPEAV SKLESNANAT HLQSNVEEAN S |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 258 | 264 | RRSRLRK |
2 | 258 | 265 | RRSRLRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:1373374, ECO:0000269|PubMed:22718771}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT013873 | 0.0 | BT013873.1 Lycopersicon esculentum clone 132853R, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009775416.1 | 0.0 | PREDICTED: G-box-binding factor 1-like isoform X1 | ||||
Swissprot | P42774 | 1e-105 | GBF1_ARATH; G-box-binding factor 1 | ||||
TrEMBL | A0A1U7WDT8 | 0.0 | A0A1U7WDT8_NICSY; G-box-binding factor 1-like isoform X1 | ||||
STRING | XP_009775416.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3780 | 24 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36730.2 | 1e-101 | G-box binding factor 1 |