PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009775231.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 264aa MW: 29419 Da PI: 8.7895 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.2 | 1.4e-18 | 120 | 174 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk q Lee F+++++++ +++++LA+ l+L rqV vWFqNrRa+ k XP_009775231.1 120 RKKLRLTKAQSALLEESFKQHSTLNPKQKQDLARDLNLRPRQVEVWFQNRRARTK 174 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 122.8 | 1.7e-39 | 120 | 208 | 1 | 90 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rl+k q++lLEesF+++++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++ +l+een+rL+ke +eL+ + XP_009775231.1 120 RKKLRLTKAQSALLEESFKQHSTLNPKQKQDLARDLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCATLTEENRRLHKELQELK-A 208 69*************************************************************************************9.4 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.05E-18 | 108 | 177 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.443 | 116 | 176 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.2E-15 | 118 | 180 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.18E-15 | 120 | 177 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-17 | 120 | 174 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 4.2E-16 | 120 | 174 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 151 | 174 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 9.6E-24 | 176 | 219 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 1.8E-10 | 176 | 209 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence Send to blast |
MGSFDDISNT GLVLGLGFST TVDQKSTKIL LAGKGPSLGF EPSLTLSLSG DRTYNEQQQA 60 AKKVKNDHQS ADLYRQDSAA SSYSNASVKR ERDAGSEETT EVERVSSRVS DEDDDGSNAR 120 KKLRLTKAQS ALLEESFKQH STLNPKQKQD LARDLNLRPR QVEVWFQNRR ARTKLKQTEV 180 DCEFLKKCCA TLTEENRRLH KELQELKAVK IAQPLYMQLP AATLTMCPSC ERIGGVGENP 240 SKNPFTLAQK PHFYNSFTNP SAAC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 168 | 176 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00477 | DAP | Transfer from AT4G37790 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU998971 | 0.0 | EU998971.1 Nicotiana benthamiana homeodomain leucine-zipper 1 (HB1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009775231.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HAT22-like | ||||
Swissprot | P46604 | 5e-92 | HAT22_ARATH; Homeobox-leucine zipper protein HAT22 | ||||
TrEMBL | A0A1U7WDA8 | 0.0 | A0A1U7WDA8_NICSY; homeobox-leucine zipper protein HAT22-like | ||||
STRING | XP_009775231.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA290 | 24 | 186 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37790.1 | 2e-86 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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