PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009774660.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 282aa    MW: 31046.3 Da    PI: 8.4098
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009774660.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.59e-19189223135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++C +t Tp+WR+gp g+ktLCnaCG++yr+ +l
  XP_009774660.1 189 CTHCEVTRTPQWREGPLGPKTLCNACGVRYRSGRL 223
                     *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577162.85E-14183245No hitNo description
PROSITE profilePS5011411.398183219IPR000679Zinc finger, GATA-type
SMARTSM004011.2E-14183237IPR000679Zinc finger, GATA-type
CDDcd002021.05E-14188235No hitNo description
Gene3DG3DSA:3.30.50.109.6E-14188220IPR013088Zinc finger, NHR/GATA-type
PfamPF003201.1E-16189223IPR000679Zinc finger, GATA-type
PROSITE patternPS003440189214IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MLKGLRGFCS MNINMVEQNC WDDIPMGPIV DEDFESLLNS LDFPLESLED DGLGGDWDPS  60
LYQLLGPIPA DALMALPPVY DANGCLNAAN EFPEAQGTVL FQTQSPISVL EHNSSCSGGK  120
STSSNFGTKG RRSKRARSST LNPWILMAPA SCTAFAAKKN SDAKKGKEKK RRKLSQQSSV  180
MDSSLFKKCT HCEVTRTPQW REGPLGPKTL CNACGVRYRS GRLLPEYRPA ASPTFVPSLH  240
SNSHRKVIEM RRNAVQGDVL ETKRSFSNVT EAKICSSEYV FV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1168172KKRRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00130DAPTransfer from AT1G08010Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009774660.10.0PREDICTED: GATA transcription factor 11-like
RefseqXP_016486021.10.0PREDICTED: GATA transcription factor 11-like
TrEMBLA0A1S4BB310.0A0A1S4BB31_TOBAC; GATA transcription factor 11-like
TrEMBLA0A1U7WK810.0A0A1U7WK81_NICSY; GATA transcription factor 11-like
STRINGXP_009774660.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31342149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.23e-51GATA transcription factor 11