PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009773899.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TALE
Protein Properties Length: 645aa    MW: 71763.1 Da    PI: 8.1131
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009773899.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.92e-093914281954
                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  XP_009773899.1 391 FEHflHPYPKDSDKIMLAKQTGLTRSQVSNWFINARVR 428
                     554459******************************88 PP
2BELL119.71.3e-38254325172
            BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     +rqe q+kkakL+++leeV++rY+qy++q+q+++ssFe+vag+gsak+Yt+lAl+aiS++FrcLkdai++qi
  XP_009773899.1 254 QRQEFQMKKAKLVTMLEEVEQRYRQYHHQMQIIVSSFEQVAGIGSAKSYTQLALHAISKQFRCLKDAIVGQI 325
                     699********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.2E-60178323IPR006563POX domain
PfamPF075267.5E-48183322IPR006563POX domain
PROSITE profilePS5007112.05369432IPR001356Homeobox domain
CDDcd000868.26E-12372433No hitNo description
SMARTSM003894.2E-10372436IPR001356Homeobox domain
SuperFamilySSF466894.28E-17373439IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.4E-29375438IPR009057Homeodomain-like
PfamPF059202.5E-18389428IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 645 aa     Download sequence    Send to blast
MYYQGTSDNI HQAADGNIQT LYLMNPNYIH QGYSNDTQQQ QHQHQHHQQQ IIRHAPLQQA  60
QQHFVGVPLP AVSLHDQNHA QLIHRLWNQS GGGGGNGSHH QSQIIPSSTV VSATSCGGST  120
TDLASQLGFQ RPIIMSPTQQ QQQQGGLSLS LSPQQQQISF NNISAQNQVG SNINRGLDGI  180
SSMVLGSKYL KAAQELLDEV VNVGKCIKGS ELEKGELMNK ESILPLASDV NTSNSGGESS  240
SKQKNGVAEL TTAQRQEFQM KKAKLVTMLE EVEQRYRQYH HQMQIIVSSF EQVAGIGSAK  300
SYTQLALHAI SKQFRCLKDA IVGQIKATSK SLGEEDQSLG EKIEGSRLKF VDHHLRQQRA  360
LQQLGMMQPN AWRPQRGLPE RAVSVLRAWL FEHFLHPYPK DSDKIMLAKQ TGLTRSQVSN  420
WFINARVRLW KPMVEEMYLE EMKNNQEQNS SSEENKNKNE SNKEKMVSKS SAPQESGTPT  480
EIATSTISTP PTACGSSFQA AQAHNFSFLG SLNMENNTTT KKPRNHDMHN NSPSNILSSV  540
DMAETKARDH QSKKGFNPLM DAAAVYTMGE FGRFNPHEQM AATNFHGNNG VSLTLGLPPN  600
SENLSQQSYQ NTIEFNRMSY ENIDFQNKRF PSQILPDFVA GNLGT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A5e-16378436563Homeobox protein Meis2
3k2a_B5e-16378436563Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4066970.0AF406697.1 Solanum tuberosum BEL1-related homeotic protein 5 (Bel5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009773899.10.0PREDICTED: BEL1-like homeodomain protein 1
RefseqXP_009773900.10.0PREDICTED: BEL1-like homeodomain protein 1
TrEMBLA0A1U7WGY10.0A0A1U7WGY1_NICSY; BEL1-like homeodomain protein 1
STRINGXP_009773899.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14782467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.31e-104BEL1-like homeodomain 1