PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009772765.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 376aa MW: 40493.2 Da PI: 7.4754 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.6 | 1.4e-13 | 119 | 163 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + ++lG+g+W+ I+r + + Rt+ q+ s+ qky XP_009772765.1 119 PWTEEEHRLFLLGLQKLGKGDWRGISRNFVTSRTPTQVASHAQKY 163 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.60.10 | 4.9E-4 | 2 | 23 | IPR001878 | Zinc finger, CCHC-type |
PROSITE profile | PS50158 | 8.515 | 3 | 19 | IPR001878 | Zinc finger, CCHC-type |
PROSITE profile | PS51294 | 18.642 | 112 | 168 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.39E-17 | 114 | 169 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.7E-18 | 115 | 167 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 1.3E-11 | 116 | 162 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.6E-11 | 116 | 166 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.58E-9 | 119 | 164 | No hit | No description |
Pfam | PF00249 | 5.9E-11 | 119 | 163 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 376 aa Download sequence Send to blast |
MTRRCSHCNN NGHNSRTCPT TRGGTPTGGV GSSSGGGGGG SGGVRLFGVR LTDGSIMKKS 60 ASMGNLSSLH SYHSSSSPNP PGSPSSDVPH LPDGYLSDDP NTHASISANR RLERKKGVPW 120 TEEEHRLFLL GLQKLGKGDW RGISRNFVTS RTPTQVASHA QKYFIRQSNA TRRKRRSSLF 180 DIVADTGTDA SHPLSEEQFM LPPRAIESDK EHLIPPATKA IETDFADTLP SLYLSLKSDF 240 ESMETTPSEP VEETKPNTTT NEIPSVYPAF FPAYIPVPYS FWPSNAVPVP EDRGAEPSHH 300 QILKPIPTVP KEPVNVDELV GMSQLTLADA GSGHIEPSPL SLKLTAEPSR QSAFHASTPV 360 KTAEITKGET APIQAV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975451 | 0.0 | HG975451.1 Solanum pennellii chromosome ch12, complete genome. | |||
GenBank | HG975524 | 0.0 | HG975524.1 Solanum lycopersicum chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009772765.1 | 0.0 | PREDICTED: transcription factor MYB1R1 | ||||
TrEMBL | A0A1U7WEV7 | 0.0 | A0A1U7WEV7_NICSY; transcription factor MYB1R1 | ||||
STRING | XP_009772765.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11770 | 19 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16350.1 | 8e-78 | MYB_related family protein |