PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009772640.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family G2-like
Protein Properties Length: 429aa    MW: 47512.5 Da    PI: 7.5654
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009772640.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.94.1e-32255308255
         G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  XP_009772640.1 255 PRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 308
                     9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.51E-15252308IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-28253308IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-23255308IPR006447Myb domain, plants
PfamPF002497.8E-7256307IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009887Biological Processorgan morphogenesis
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009956Biological Processradial pattern formation
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010158Biological Processabaxial cell fate specification
GO:0010229Biological Processinflorescence development
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MPLEGVFIEP QSTNSKQIPD LSLNISPPNS SSSPSCNNIN ELLATSSFDL SSRCTTEVSE  60
NHRRLEFSKS GNCLTELSLA HPTTTTTTTT NTTSATIYDE SRRGFLDLPR NPYYNNHYSQ  120
NYNHMVQPMN QINHGVSSLD VSDGLRPIKG IPVYNHNRSF PFLANLDKEK DPKMCFYPMA  180
SSSSPLFSPP SSSPYINNRF NGISSSYQVP HHHLHHSQYG VGLGHSSHET ATSHHSLMRS  240
RFLPKLPAKR SMRAPRMRWT STLHARFVHA VELLGGHERA TPKSVLELMD VKDLTLAHVK  300
SHLQMYRTVK TTDKPAASSG QSDGSGEDDL TTIGSTGTGD RTGLCRFTDQ RGASDGSVQP  360
ESDYPSTANP TLWSNSSSRE GWLQANSNDA NGLRSPCFPS QQKSGHQIEK NPSLEFTLGR  420
PDWVEKEHD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-16256310458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-16256310458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A9e-17256310357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B9e-17256310357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C9e-17256310357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D9e-17256310357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-16256310458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-16256310458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-16256310458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-16256310458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-16256310458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-16256310458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754504e-49HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009772640.10.0PREDICTED: transcription repressor KAN1 isoform X2
RefseqXP_016437594.10.0PREDICTED: transcription repressor KAN1-like isoform X3
TrEMBLA0A1S3XCP20.0A0A1S3XCP2_TOBAC; transcription repressor KAN1-like isoform X3
TrEMBLA0A1U7WEI10.0A0A1U7WEI1_NICSY; transcription repressor KAN1 isoform X2
STRINGXP_009772639.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16560.11e-63G2-like family protein