PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009772249.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 386aa    MW: 43361.6 Da    PI: 7.242
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009772249.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM93.34e-294116111129
             NAM  11 deelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknr..atksgyWkatgkdkevlskkgelvgl 102
                     de l+ +yL kk+ +++++   +i+evd++ ++P++L  +++ ++ k+wyf s++++ky++g ++nr  + ++gyW+  g+d  +++ +g+l+g 
  XP_009772249.1  41 DEGLIIHYLDKKMMDQPFPN-YTIHEVDVFLYHPHQLSqMHHPSQAKKWYFVSPASNKYTEGGQSNRvsVNDDGYWEPCGTDSLIHK-DGKLIGY 133
                     999**************999.67**************8446666888********************633559***********999.99***** PP

             NAM 103 kktLvfykg.rapkgektdWvmheyrle 129
                     +ktL + +g ++++ ++t+W+mheyrle
  XP_009772249.1 134 RKTLNYIEGkHDKDMKRTEWLMHEYRLE 161
                     *******9945566789*********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100534.6331176IPR003441NAC domain
PfamPF023653.1E-1441160IPR003441NAC domain
SuperFamilySSF1019413.27E-3441176IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MEGKGKQDST ANVTNVNKNC PDVGVIPKQE VLVDDQLSGA DEGLIIHYLD KKMMDQPFPN  60
YTIHEVDVFL YHPHQLSQMH HPSQAKKWYF VSPASNKYTE GGQSNRVSVN DDGYWEPCGT  120
DSLIHKDGKL IGYRKTLNYI EGKHDKDMKR TEWLMHEYRL EGSRDMQRVF CKLFKSNNKL  180
MEAEEKEATK FAAPNDGVSS ADPTIQGPEK ANDITNDKGP SNGHGRDLLP MPDTDQGTTI  240
PTPMPQHVQG TTLTRTGRQK ATNNVVRNKR PRRKRDSHPP PASHQGLMMP HLPNANSQPQ  300
RDQGIRLPPP LPQNDERKTF PISTGPYKAN NGVVLTDNGP SNSLVVPFCP EYILDEPSFD  360
WTVANSWLQD GTMPPSRPQH GSSFFC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-194117830170NAC domain-containing protein 19
3swm_B2e-194117830170NAC domain-containing protein 19
3swm_C2e-194117830170NAC domain-containing protein 19
3swm_D2e-194117830170NAC domain-containing protein 19
3swp_A2e-194117830170NAC domain-containing protein 19
3swp_B2e-194117830170NAC domain-containing protein 19
3swp_C2e-194117830170NAC domain-containing protein 19
3swp_D2e-194117830170NAC domain-containing protein 19
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1269273RPRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009772249.10.0PREDICTED: uncharacterized protein LOC104222681 isoform X3
RefseqXP_016500365.10.0PREDICTED: uncharacterized protein LOC107818826 isoform X2
TrEMBLA0A1S4CGR20.0A0A1S4CGR2_TOBAC; uncharacterized protein LOC107818826 isoform X2
TrEMBLA0A1U7WC660.0A0A1U7WC66_NICSY; uncharacterized protein LOC104222681 isoform X3
STRINGXP_009772246.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.12e-23NAC-like, activated by AP3/PI