PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009770481.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | B3 | ||||||||
Protein Properties | Length: 435aa MW: 50353.6 Da PI: 9.3159 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 37.8 | 3.5e-12 | 18 | 96 | 9 | 98 |
HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 9 dvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +k++ l +p f+ ++ g++ +++ + + +++W+vk+ ++++ ++ GW +F+++++L+ gD ++F+++g++ f v +f+ XP_009770481.1 18 PGFKHA-LKIPTGFL-KYlkGYD---HIEHAILRRGSKQWRVKV--NGCR----FEVGWADFAQQHDLQLGDLLIFRHEGNMVF--EVIIFD 96 455555.9*******.6655444...5677888999********..7777....999*********************999999..777776 PP | |||||||
2 | B3 | 51.4 | 1.9e-16 | 146 | 228 | 4 | 88 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88 +++s++l++g +++p +fa+++g++ ++ +l+++de+ rsW++kl + +++++++ W +F an+Lk+gD + F+++ + + XP_009770481.1 146 CTVRSYYLTNGYMRVPSRFASKNGLIYKK-CDLIIRDERQRSWNLKL--YTSCDHVYIGGRWAKFHAANDLKVGDRIKFEVVTNgE 228 5678*******************998655.59***************..99999**************************876523 PP | |||||||
3 | B3 | 43.1 | 7.4e-14 | 334 | 420 | 5 | 95 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 +++++ l+ + l+lp +fa ++g+++ ++ +l+++de+ rsW++ l r + ++ +++GW++ + + LkegD ++F+++ +++++v k XP_009770481.1 334 TIRPYCLTYSYLILPTQFALTNGLIN-KKYDLIIRDEWQRSWNLML--RPFGTSVCIRGGWSKLRDTHCLKEGDQIMFEVVT-DGTKPVWK 420 56788999999***********9995.668****************..*******************************876.56656655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.7E-18 | 5 | 100 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.83E-19 | 7 | 100 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.152 | 9 | 98 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.73E-13 | 10 | 96 | No hit | No description |
SMART | SM01019 | 4.0E-11 | 12 | 98 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.8E-9 | 20 | 96 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.6E-16 | 141 | 234 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.34E-17 | 142 | 237 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.406 | 143 | 237 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.7E-8 | 144 | 238 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-14 | 147 | 229 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.42E-13 | 149 | 238 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 2.6E-14 | 327 | 421 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.16E-16 | 329 | 422 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.743 | 330 | 424 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.9E-12 | 331 | 425 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.1E-12 | 334 | 420 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 6.80E-11 | 345 | 418 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 435 aa Download sequence Send to blast |
MKEKVRPAKP HFFKPIQPGF KHALKIPTGF LKYLKGYDHI EHAILRRGSK QWRVKVNGCR 60 FEVGWADFAQ QHDLQLGDLL IFRHEGNMVF EVIIFDSSHC DREYAEYLLQ EEDIVEEACK 120 KFKFKDGFPL AEAATHNPFG QSHFECTVRS YYLTNGYMRV PSRFASKNGL IYKKCDLIIR 180 DERQRSWNLK LYTSCDHVYI GGRWAKFHAA NDLKVGDRIK FEVVTNGERP IWKFHVKRNP 240 SIKSSSKAFP YAEAATHKPF GPSHLDSGHC NREYAEYLQE KEEEKEEAAG DAVEGTSKKF 300 KLKEEPNPSV KSSSKAFPHV EAAIHKPFGH FVCTIRPYCL TYSYLILPTQ FALTNGLINK 360 KYDLIIRDEW QRSWNLMLRP FGTSVCIRGG WSKLRDTHCL KEGDQIMFEV VTDGTKPVWK 420 FHGKISGECK NQSRG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009770481.1 | 0.0 | PREDICTED: B3 domain-containing protein REM5-like isoform X1 | ||||
TrEMBL | A0A1U7VZU3 | 0.0 | A0A1U7VZU3_NICSY; B3 domain-containing protein REM5-like isoform X1 | ||||
STRING | XP_009770481.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA322 | 15 | 171 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00260.1 | 1e-39 | B3 family protein |