PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009770460.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 226aa MW: 26236.6 Da PI: 9.4093

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009770460.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	109.7	2.2e-34	9	104	1	95
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkael 94 aCa+Ck++r+kC+++Cvlapyfpae++++f++vhk+FG+sn++k++k+l+e++ r++a++sl++eA +r++dPv G +g ++++ ++l+ k++ XP_009770460.1 9 ACASCKHQRKKCTEKCVLAPYFPAEKSREFKAVHKVFGVSNITKIVKNLKEDHdRRKAVESLIWEAFCRQKDPVFGPYGEYKRIFEELKLYKTQY 103 7**********************************************66555****************************99999998876 PP DUF260 95 a 95 + XP_009770460.1 104 Q 104 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.159	8	110	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.4E-33	9	105	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MQKPSGTAAC ASCKHQRKKC TEKCVLAPYF PAEKSREFKA VHKVFGVSNI TKIVKNLKED 60 HDRRKAVESL IWEAFCRQKD PVFGPYGEYK RIFEELKLYK TQYQQILQMP ISQGSNNNGM 120 VYEATAQGLI NGWSINKRNE NNLLYINENS TVESWSSYNN KNNPLHHHVQ NIEKLRTENN 180 NGSIVIVPQP QAYNEFNQQY FLAGQYNPID SKSRESMLWE DHSRKS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-22	4	87	6	88	LOB family transfactor Ramosa2.1
5ly0_B	1e-22	4	87	6	88	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009770460.1	1e-170	PREDICTED: LOB domain-containing protein 2-like
TrEMBL	A0A1U7W884	1e-169	A0A1U7W884_NICSY; LOB domain-containing protein 2-like
STRING	XP_009770460.1	1e-170	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10177	18	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06280.1	2e-43	LOB domain-containing protein 2