PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009770305.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 272aa    MW: 29912.9 Da    PI: 9.8044
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009770305.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.71.6e-18172205134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C++C  tkTp+WR gp g+ktLCnaCG++y++ +
  XP_009770305.1 172 CQHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 205
                     *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.213166202IPR000679Zinc finger, GATA-type
SMARTSM004013.7E-17166216IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.7E-15170229No hitNo description
Gene3DG3DSA:3.30.50.104.1E-15170203IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.56E-15171228No hitNo description
PfamPF003203.9E-16172205IPR000679Zinc finger, GATA-type
PROSITE patternPS003440172197IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
SCLQYEDIVQ LEWLSTFVED SFSGGGLTLG KENFPLYKET SEAKFQTSSP VSVLESSSSS  60
SSSSCSVEKT VPLSSPCHRG PQRARSKRPR PATFNPAPVI QLISPTSSFT EIPQPFVARG  120
IASESENFAE SPMKKILKPA VAEQKKKKLK LSFPSARVEA NQNPVAQTIR KCQHCEITKT  180
PQWRAGPMGP KTLCNACGVR YKSGRLFPEY RPAASPTFVP SIHSNSHKKV IEMRTKFVPD  240
NNANIARTAP PATVTQPEFN PSNKESVEEE NK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18690KRPRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1076930.0AB107693.1 Nicotiana tabacum AGP5 mRNA for AG-motif binding protein-5, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009770305.10.0PREDICTED: GATA transcription factor 8-like, partial
TrEMBLA0A1U7W7S50.0A0A1U7W7S5_NICSY; GATA transcription factor 8-like
STRINGXP_009770305.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23452358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.28e-41GATA family protein